PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5AL_538EC4C86.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bZIP | ||||||||
Protein Properties | Length: 174aa MW: 19813.2 Da PI: 10.1809 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31 | 5.6e-10 | 11 | 63 | 11 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 11 qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 NR +A rs +RK +++ eLe+kv++L++e ++L +l l+ + l++e+ Traes_5AL_538EC4C86.1 11 LANRQSAARSKERKIKYTGELERKVQTLQTEATTLSAQLTLLQRDTSGLTTEN 63 56***************************************999988888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.7E-9 | 4 | 65 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 1.42E-19 | 9 | 55 | No hit | No description |
Pfam | PF00170 | 3.1E-8 | 9 | 63 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.42E-10 | 9 | 56 | No hit | No description |
PROSITE profile | PS50217 | 9.588 | 9 | 66 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.1E-10 | 9 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
FRIIVCLCRI LANRQSAARS KERKIKYTGE LERKVQTLQT EATTLSAQLT LLQRDTSGLT 60 TENRELKLRL QSMEEQAKLR DALNDALREE VQRLKIAAGQ APNMNGSQFN GGFQQIPSYF 120 SQQHQRQRQQ QQQQQMAYIG GHQAQRHHPN HHQSPSNGGQ SLSGLSLDDS MDFI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372616 | 1e-173 | AK372616.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3007C09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172126.1 | 1e-102 | transcription factor VIP1-like | ||||
Swissprot | Q6S4P4 | 2e-45 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A3B6KG52 | 1e-114 | A0A3B6KG52_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446SWB3 | 1e-114 | A0A446SWB3_TRITD; Uncharacterized protein | ||||
STRING | Traes_5AL_538EC4C86.1 | 1e-124 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1925 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43700.1 | 2e-33 | VIRE2-interacting protein 1 |
Publications ? help Back to Top | |||
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