PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5AL_3312FD71F.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Nin-like

Protein Properties

Length: 659aa MW: 73723.5 Da PI: 7.3478

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5AL_3312FD71F.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	87.2	1.4e-27	345	395	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+k+F++++k+AAk+Lgvc+T+LKriCR++GI+RWP+Rkik++ Traes_5AL_3312FD71F.2 345 EKTVSLQELRKHFAGSLKEAAKNLGVCPTTLKRICRHHGIDRWPSRKIKKV 395 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.688	334	415	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-25	347	395	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.77E-23	559	652	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-23	565	648	No hit	No description
PROSITE profile	PS51745	24.146	567	649	IPR000270	PB1 domain
SMART	SM00666	5.9E-26	567	649	IPR000270	PB1 domain
CDD	cd06407	6.32E-40	568	648	No hit	No description
Pfam	PF00564	1.3E-17	568	648	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence Send to blast
MIPLCSKATS VKICRRLISE VLMFQAILAH RWSILPTEQL YQRSRMFSKL FVRPISCHWP 60 RHGYPAXXXX XXXXXXXXXX XXXXXXXXXX XPAMTGFHQA CSEHHLFRGE GVVGTALGTN 120 EPCFCPDITA YSKVQYPLSH YAKLFGLRAA VAIRLRSVKT GSMDLILEFF LPNNCINSEE 180 QGNMLNSLSN TIQQASCTLR VVGVKELAND GSPETSSPTP PEVCDKPAEI LDELASGIDI 240 PARTTSVDAS EEVSSWIASL VDVQNNAAQA ETDCGLPFGF RKQEDEGFSV TAGWPTSPVL 300 VPEDKSFFPG FKKHEEYEAK GSPFSSDRSL SNSDKAIEKR RTKIEKTVSL QELRKHFAGS 360 LKEAAKNLGV CPTTLKRICR HHGIDRWPSR KIKKVGHSLK KLQMVIDSVH GAEGTVRLSS 420 LYENFTKTTW SERELHGDLS YPASEQKVQL EPSVPDRQCE SRFSPHTSGS NSLSPTYSQS 480 SNSSLGCSSD PKPQQQQSSA PQLAVKQEFF MEENQSSTQM KAASHDELQL FTEEKPVTLC 540 RSQSHMLFSE HKPMANMSGM QEAKPDSLKI KAMYGEERCI FRLQPSWGFE KLKEEIAKRF 600 GISREIYDLK YLDDESEWVL LTCDADLLEC IDVYKSSSAK TVRISVNPTV QPALRGSFG

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence Send to blast

MIPLCSKATS VKICRRLISE VLMFQAILAH RWSILPTEQL YQRSRMFSKL FVRPISCHWP  60
RHGYPAXXXX XXXXXXXXXX XXXXXXXXXX XPAMTGFHQA CSEHHLFRGE GVVGTALGTN  120
EPCFCPDITA YSKVQYPLSH YAKLFGLRAA VAIRLRSVKT GSMDLILEFF LPNNCINSEE  180
QGNMLNSLSN TIQQASCTLR VVGVKELAND GSPETSSPTP PEVCDKPAEI LDELASGIDI  240
PARTTSVDAS EEVSSWIASL VDVQNNAAQA ETDCGLPFGF RKQEDEGFSV TAGWPTSPVL  300
VPEDKSFFPG FKKHEEYEAK GSPFSSDRSL SNSDKAIEKR RTKIEKTVSL QELRKHFAGS  360
LKEAAKNLGV CPTTLKRICR HHGIDRWPSR KIKKVGHSLK KLQMVIDSVH GAEGTVRLSS  420
LYENFTKTTW SERELHGDLS YPASEQKVQL EPSVPDRQCE SRFSPHTSGS NSLSPTYSQS  480
SNSSLGCSSD PKPQQQQSSA PQLAVKQEFF MEENQSSTQM KAASHDELQL FTEEKPVTLC  540
RSQSHMLFSE HKPMANMSGM QEAKPDSLKI KAMYGEERCI FRLQPSWGFE KLKEEIAKRF  600
GISREIYDLK YLDDESEWVL LTCDADLLEC IDVYKSSSAK TVRISVNPTV QPALRGSFG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164886.1	0.0	protein NLP1-like
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A446TMU1	0.0	A0A446TMU1_TRITD; Uncharacterized protein
STRING	Traes_5AL_3312FD71F.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	1e-111	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]