PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_315285EFC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Nin-like
Protein Properties Length: 842aa    MW: 92410 Da    PI: 7.2104
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_315285EFC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK89.62.5e-28526576252
                 RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            ek++sl +l++yF++++kdAA++Lgvc+T+LKriCRq+GI+RWP+Rkik++
  Traes_5AL_315285EFC.1 526 EKTVSLPVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGINRWPSRKIKKV 576
                            799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.45515596IPR003035RWP-RK domain
PfamPF020429.7E-25529576IPR003035RWP-RK domain
SuperFamilySSF542773.92E-20734827No hitNo description
Gene3DG3DSA:3.10.20.2401.3E-23741825No hitNo description
SMARTSM006661.4E-20744827IPR000270PB1 domain
PROSITE profilePS5174519.144744827IPR000270PB1 domain
CDDcd064075.08E-40745825No hitNo description
PfamPF005641.1E-15745825IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MEGGDAPPGI SMGRSMSSEG DLDLLEQLLS GDNAWLEVAP NTSRSPNFFA SPSTFLSDAT  60
ATTTTTPAGA NSTLWIPPAS STVRQRFEQA LDYIKQMQRD AGMLVQLWVP QKNRDGKLVL  120
TTSGQPFTLD NTSDRLMQFR DVSTHYHFSA DVGSEASPVG LPGRVFIGKL PEWSPDVRLF  180
TSYEYPRVKY AQDLDVHGTM GLPVFEKGSY SCLGVMELIM TRQKLNFTSE INDICRALQA  240
VNLRSTEVSS TPRATKFNSA SYKDALPEIL EVLRAACVTH NLPLAQTWVT CAQQGKGGSR  300
HTDENYPYCI STIDTACYVN DPQMQNFHDS CSDHHLLRGQ GVAGKAFETN QPCFLPDIGS  360
SAKEHYPLSH HAKIFNLKGA VAIRLRCTRT GTADFVLEFF LPTNCEALEE QKAVLDSLSG  420
TMRSACRTLR VVTDKEIGDE EMLEVNELNS FGPQGKNKVE ELSFGNQATE HREEASWTSL  480
ARTSKESDLA ELSMHGMLSP VGQGLSPAGA QTSAQGSKGK RRTKTEKTVS LPVLRQYFAG  540
SLKDAARSLG VCPTTLKRIC RQHGINRWPS RKIKKVDHSL RKLQQIIDSV HGGETAFQLN  600
TLYKDLTNTS VSSDNNLSGS VTVPPHKQSN LTDFEGHRHH RLSSNVPSTS HSHSSCSQSS  660
DSSPSSCSGG STKHPPQAGV DLLMSGNPVN HSPVQTLQTE NASIRGHFPV QEAPDLLHNL  720
NQQALGGQHS SRSPSPPKQN ADAGMRIKAT FGSEKVRFRL KPECSFQELK QEMARRLSIV  780
DTSFLIVKYL DDDLEWVLMT CDADLQECLH VYKLANLQTV KISVHLAPIP EARVTIGHTG  840
LS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3586000.0AK358600.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1079K24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196253.10.0protein NLP1-like isoform X2
TrEMBLA0A3B6KKM10.0A0A3B6KKM1_WHEAT; Uncharacterized protein
STRINGTraes_5AL_315285EFC.10.0(Triticum aestivum)
STRINGTraes_5AL_315285EFC1.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55543852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]