PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Traes_4DS_F74D72DF1.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ZF-HD

Protein Properties

Length: 74aa MW: 8098 Da PI: 6.8924

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DS_F74D72DF1.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	90.8	1.3e-28	12	63	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 + +Y+eCl+NhAa+lG++a DGC+E++p+ ++++aal CaACgCHRnFHR+ Traes_4DS_F74D72DF1.1 12 REVYRECLRNHAAKLGTYASDGCCEYTPD---DSQPAALLCAACGCHRNFHRKAF 63 568***********************8...6789**************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.0E-24	14	62	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	7.0E-20	15	61	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.0E-23	15	61	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.287	15	62	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MEQLQHQQER AREVYRECLR NHAAKLGTYA SDGCCEYTPD DSQPAALLCA ACGCHRNFHR 60 KAFLDGAASP GAAS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU971875	7e-56	EU971875.1 Zea mays clone 371882 ZF-HD protein dimerisation region containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020168474.1	4e-48	zinc-finger homeodomain protein 11-like
Swissprot	A2XLF4	1e-35	ZHD11_ORYSI; Zinc-finger homeodomain protein 11
Swissprot	Q10DV5	1e-35	ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBL	A0A3B6INY3	9e-47	A0A3B6INY3_WHEAT; Uncharacterized protein
TrEMBL	A0A3B6U085	9e-47	A0A3B6U085_WHEAT; Uncharacterized protein
TrEMBL	A0A446RS90	9e-47	A0A446RS90_TRITD; Uncharacterized protein
STRING	Traes_4AL_5659286D11.1	4e-47	(Triticum aestivum)
STRING	Traes_4DS_F74D72DF1.1	4e-48	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9204	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14687.1	1e-18	homeobox protein 32

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]