PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_F3750ABFD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ZF-HD
Protein Properties Length: 395aa    MW: 41822.1 Da    PI: 8.2615
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_F3750ABFD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.11.8e-32118172358
            ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                            +v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+e +
  Traes_4DS_F3750ABFD.1 118 AVKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKELD 172
                            689*************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.5E-29119170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-30120170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-24120172IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.735121170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.66E-21272340IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-31274341IPR009057Homeodomain-like
TIGRFAMsTIGR015656.2E-27282338IPR006455Homeodomain, ZF-HD class
CDDcd000868.24E-4283336No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MYALGVCKWY LLDKRRRTEA AASARGILPD REERMDLSVP RGEFPIPMHA AASPYGGIGG  60
GGVAVADHAM ELHHDHANHN GQSQSQAQDM PSPPAAVSED SSGKKRAAAI AGGAGGPAVK  120
YRECLKNHAA AIGGNATDGC GEFMPSGEEG SLEALKCSAC GCHRNFHRKE LDDFDGDSCA  180
SHGYGYGHHA VRRLLGPAVP HHHKSSGGLL VTADHYGAYA AARALPPPPP PPLGHHHQII  240
MPLNMIQTSE SDEMDGSGGG GIMGDGRGGL ASGGGGGSSS SKKRFRTKFT AEQKGRMLEF  300
AENVGWRLQK LDDAMVQHFC QEIGVKRRVL KVWMHNNKHN LASRPLPTSP AQPQSQSMPL  360
AMSMPMPMQV PPSQPGPSGH RGPSSPHAQG ELKLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-242813401675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3615790.0AK361579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1144B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179853.10.0zinc-finger homeodomain protein 4-like isoform X1
SwissprotQ53N871e-100ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBLA0A3B6JHA70.0A0A3B6JHA7_WHEAT; Uncharacterized protein
STRINGTraes_4DS_F3750ABFD.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-56homeobox protein 31
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]