PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DS_F3750ABFD.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 395aa MW: 41822.1 Da PI: 8.2615 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.1 | 1.8e-32 | 118 | 172 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+e + Traes_4DS_F3750ABFD.1 118 AVKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKELD 172 689*************************9.999********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.5E-29 | 119 | 170 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-30 | 120 | 170 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-24 | 120 | 172 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.735 | 121 | 170 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.66E-21 | 272 | 340 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.7E-31 | 274 | 341 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.2E-27 | 282 | 338 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 8.24E-4 | 283 | 336 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MYALGVCKWY LLDKRRRTEA AASARGILPD REERMDLSVP RGEFPIPMHA AASPYGGIGG 60 GGVAVADHAM ELHHDHANHN GQSQSQAQDM PSPPAAVSED SSGKKRAAAI AGGAGGPAVK 120 YRECLKNHAA AIGGNATDGC GEFMPSGEEG SLEALKCSAC GCHRNFHRKE LDDFDGDSCA 180 SHGYGYGHHA VRRLLGPAVP HHHKSSGGLL VTADHYGAYA AARALPPPPP PPLGHHHQII 240 MPLNMIQTSE SDEMDGSGGG GIMGDGRGGL ASGGGGGSSS SKKRFRTKFT AEQKGRMLEF 300 AENVGWRLQK LDDAMVQHFC QEIGVKRRVL KVWMHNNKHN LASRPLPTSP AQPQSQSMPL 360 AMSMPMPMQV PPSQPGPSGH RGPSSPHAQG ELKLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-24 | 281 | 340 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00258 | DAP | Transfer from AT2G02540 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361579 | 0.0 | AK361579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1144B18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179853.1 | 0.0 | zinc-finger homeodomain protein 4-like isoform X1 | ||||
Swissprot | Q53N87 | 1e-100 | ZHD4_ORYSJ; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A3B6JHA7 | 0.0 | A0A3B6JHA7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4DS_F3750ABFD.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 2e-56 | homeobox protein 31 |
Publications ? help Back to Top | |||
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