PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Traes_4DS_DA077BB06.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 166aa MW: 17767.2 Da PI: 8.1399

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DS_DA077BB06.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.8	2.1e-44	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+C+++Cv+apyfp+ +p++fa vhk+FGasn++kll+++p e+r da+sslvyeA+ar+rdP+yG+vg i++lq+q+e Traes_4DS_DA077BB06.1 10 PCAACKLLRRRCSPGCVFAPYFPSGEPHRFASVHKVFGASNISKLLQEIPAEHRGDAVSSLVYEANARVRDPIYGCVGAITSLQRQVE 97 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 +l+++lal+++e Traes_4DS_DA077BB06.1 98 SLQTQLALAQAE 109 ******9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.256	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-43	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MKEAAAGVSP CAACKLLRRR CSPGCVFAPY FPSGEPHRFA SVHKVFGASN ISKLLQEIPA 60 EHRGDAVSSL VYEANARVRD PIYGCVGAIT SLQRQVESLQ TQLALAQAEM VRLRMANAYG 120 GGGSSASGSP SSMSSPTKAT PDHHHMAVDQ PGVMELELEC SRFWSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-49	9	112	10	113	LOB family transfactor Ramosa2.1
5ly0_B	3e-49	9	112	10	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT069911	5e-99	BT069911.1 Zea mays full-length cDNA clone ZM_BFb0321D10 mRNA, complete cds.
GenBank	KJ727650	5e-99	KJ727650.1 Zea mays clone pUT5577 LOB transcription factor (LOB19) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181605.1	2e-98	LOB domain-containing protein 4-like
Swissprot	Q8LBW3	2e-54	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A3B6JBX5	1e-117	A0A3B6JBX5_WHEAT; Uncharacterized protein
STRING	Traes_4DS_DA077BB06.1	1e-120	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-56	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]