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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DS_B98800798.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 27048.8 Da PI: 8.5988 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.4 | 3.5e-33 | 2 | 75 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke+++ +g+lvg+kktLvfy grapkgekt+Wvmheyr+ Traes_4DS_B98800798.1 2 GEKEWYFFSMRDRKYPTGIRTNRATESGYWKTTGKDKEIFH-GGRLVGMKKTLVFYGGRAPKGEKTSWVMHEYRI 75 579**************************************.*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 41.616 | 1 | 96 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.28E-39 | 2 | 96 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.2E-16 | 6 | 75 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGEKEWYFFS MRDRKYPTGI RTNRATESGY WKTTGKDKEI FHGGRLVGMK KTLVFYGGRA 60 PKGEKTSWVM HEYRIQNKFP YKPNKEEWVV CRVFKKSQIV KMRHPQDSPD MDSPCNDAHA 120 SLGELGEIDV SSILGSFTPA SANAPGDNFG HRIDMGAYMN WLAAANQGAA AMLPWAAAAA 180 PGLLGTVFSA NPAMQKALAP FAGCSQLPRD VGGDALFGNA MAKVDMECEQ PPQLEMHEST 240 WRTF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-33 | 1 | 96 | 68 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-33 | 1 | 96 | 68 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-33 | 1 | 96 | 68 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-33 | 1 | 96 | 68 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-32 | 1 | 96 | 71 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-32 | 1 | 96 | 71 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-32 | 1 | 96 | 71 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-32 | 1 | 96 | 71 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-32 | 1 | 96 | 71 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-32 | 1 | 96 | 71 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-32 | 1 | 96 | 71 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-32 | 1 | 96 | 71 | 168 | NAC domain-containing protein 19 |
4dul_A | 8e-33 | 1 | 96 | 68 | 165 | NAC domain-containing protein 19 |
4dul_B | 8e-33 | 1 | 96 | 68 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363171 | 0.0 | AK363171.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013D22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181735.1 | 0.0 | protein CUP-SHAPED COTYLEDON 2-like | ||||
TrEMBL | A0A3B6JGA9 | 0.0 | A0A3B6JGA9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453HCV2 | 0.0 | A0A453HCV2_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453HDI9 | 0.0 | A0A453HDI9_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DS_B98800798.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7919 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 1e-56 | NAC domain containing protein 58 |
Publications ? help Back to Top | |||
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