PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ERF

Protein Properties

Length: 128aa MW: 14310.5 Da PI: 6.9735

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DS_AB2BEFAB3.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.8	3.1e-19	13	64	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+++AeIrd s + r +lg+f+taeeAa+a+++ + +++g Traes_4DS_AB2BEFAB3.1 13 TKYRGVRRRP-WGKFAAEIRDSSR---HgVRMWLGTFDTAEEAAAAYDRSAYSMRG 64 69******.******432...25***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.9E-13	13	64	IPR001471	AP2/ERF domain
CDD	cd00018	1.24E-27	13	73	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.0E-30	14	73	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.53E-23	14	73	IPR016177	DNA-binding domain
SMART	SM00380	4.0E-32	14	80	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.617	14	72	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.2E-11	15	26	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.2E-11	38	54	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MEGGEGSGGG EPTKYRGVRR RPWGKFAAEI RDSSRHGVRM WLGTFDTAEE AAAAYDRSAY 60 SMRGRNAVLN FPDRAHVYEA EARRQGQGSS SSARQQNQQQ GQSGVIEFEY LDDDVLQSML 120 HDHDKSNK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-34	2	128	3	127	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT009060	1e-174	BT009060.1 Triticum aestivum clone wdr1f.pk003.l5:fis, full insert mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020199104.1	9e-91	ethylene-responsive transcription factor 14-like
Swissprot	Q9LTC5	6e-34	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A3B6JC44	2e-89	A0A3B6JC44_WHEAT; Uncharacterized protein
STRING	Traes_4DS_AB2BEFAB3.1	4e-90	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43410.1	1e-29	ERF family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]