PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_A980F512E.4
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 153aa    MW: 17154 Da    PI: 8.3654
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_A980F512E.4genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind60.44.8e-193794260
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
           HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                           Fl+k+y++++++ l+ +isw   g+sfvv+++++fa +vL + Fkh nf+SFvRQLn+Y
  Traes_4DS_A980F512E.4 37 FLSKTYDLVSEPWLDGVISWGPAGKSFVVWNPSTFALDVLLHNFKH-NFSSFVRQLNTY 94
                           9********************************************9.7**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.0E-1633120IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-193494IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.39E-173594IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-153794IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-53760IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-58799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
SYYSEIYISC SSPDPAAARA GGALRAAAAL VVLRPPFLSK TYDLVSEPWL DGVISWGPAG  60
KSFVVWNPST FALDVLLHNF KHNFSSFVRQ LNTYVRIVSL SNPLFFFQTI TGLLFMPPSS  120
TRETLCFCLV SSTLFRMLCF YFCSFWFLLL CSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM4460283e-66HM446028.1 Hordeum vulgare subsp. vulgare heat shock factor A3 (HsfA3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146599.13e-31heat stress transcription factor A-3-like
TrEMBLM8B8C71e-59M8B8C7_AEGTA; Uncharacterized protein
STRINGTraes_4DS_A980F512E.41e-107(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4972322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.13e-20heat shock factor 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]