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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Traes_4DS_A28BC582A.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 306aa MW: 33608.9 Da PI: 4.6642 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 81.4 | 5.9e-26 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nr+vtfskRrng++KKA+ELSvLCd+++a+++fs++ +l +s
Traes_4DS_A28BC582A.1 9 KRIENNTNRHVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSRRLCPFS 58
79*****************************************9998775 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00432 | 5.5E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 27.628 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 5.62E-28 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 6.75E-34 | 2 | 78 | No hit | No description |
| PRINTS | PR00404 | 4.9E-23 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.2E-23 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.9E-23 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.9E-23 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0010152 | Biological Process | pollen maturation | ||||
| GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 306 aa Download sequence Send to blast |
MGRVKLAIKR IENNTNRHVT FSKRRNGLIK KAYELSVLCD IDIALLMFSP SRRLCPFSGR 60 HGVEDVLLRY LNMSDNDRGE PIQNREEIQK EIYACQQQLQ ISEERLRLFE PDPAAFGSMV 120 EIDNCEKFLM DMLTRVVERK NYLLSNLAPF DPTAPGMQGG NEAQMYVHAM KTEEGGGMGT 180 FAGDAAALWG SDDGQNPGHQ IFGGTDPMIY LRHGDVGGSS QTADPWRQAY SCTELLSTLI 240 PNTPFPLMQH CLGPDDGQYL PAMVPAAQDQ LEASASCSYN IPTSDESGTP VMAYDGGGGV 300 PPPNVG |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1tqe_P | 6e-17 | 1 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 6e-17 | 1 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 6e-17 | 1 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 6e-17 | 1 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2B |
| 6byy_A | 5e-17 | 1 | 85 | 1 | 79 | MEF2 CHIMERA |
| 6byy_B | 5e-17 | 1 | 85 | 1 | 79 | MEF2 CHIMERA |
| 6byy_C | 5e-17 | 1 | 85 | 1 | 79 | MEF2 CHIMERA |
| 6byy_D | 5e-17 | 1 | 85 | 1 | 79 | MEF2 CHIMERA |
| 6bz1_A | 5e-17 | 1 | 85 | 1 | 79 | MEF2 CHIMERA |
| 6bz1_B | 5e-17 | 1 | 85 | 1 | 79 | MEF2 CHIMERA |
| 6bz1_C | 5e-17 | 1 | 85 | 1 | 79 | MEF2 CHIMERA |
| 6bz1_D | 5e-17 | 1 | 85 | 1 | 79 | MEF2 CHIMERA |
| 6c9l_A | 6e-17 | 1 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 6e-17 | 1 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 6e-17 | 1 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 6e-17 | 1 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 6e-17 | 1 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 6e-17 | 1 | 85 | 1 | 79 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | KF469335 | 1e-162 | KF469335.1 Brachypodium distachyon MADS-box transcription factor 41 mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020194809.1 | 0.0 | agamous-like MADS-box protein AGL66 | ||||
| TrEMBL | A0A3B6IKQ1 | 0.0 | A0A3B6IKQ1_WHEAT; Uncharacterized protein | ||||
| TrEMBL | A0A446RQ27 | 0.0 | A0A446RQ27_TRITD; Uncharacterized protein | ||||
| STRING | Traes_4DS_A28BC582A.1 | 0.0 | (Triticum aestivum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP4953 | 33 | 60 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G77980.1 | 2e-61 | AGAMOUS-like 66 | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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