PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_9C2FD9F381.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TCP
Protein Properties Length: 385aa    MW: 40626.6 Da    PI: 7.5353
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_9C2FD9F381.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP138.36.2e-43892423134
                     TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                             ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+eWLlqqa+pai ++tgt++ +a+++  a+s +  as    +
  Traes_4DS_9C2FD9F381.2  89 VAKRPTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETVEWLLQQAEPAIVAATGTGTVPANFStLAASLRPGAS----S 171
                             689************************************************************9999988854444444444....3 PP

                     TCP  89 kaaksaa.kskksqksaasalnlakesr........................akarararertrekmrikn 134
                             +aa++++  ++++q++ a++l ++ +++                        a + +r+r+r++++ ++++
  Traes_4DS_9C2FD9F381.2 172 RAAPFQHhLQHQPQHDVAAMLGFHGHHQhqllppppqqqhhhqhpeapqdpgAGEFMRKRYREADDLFKDT 242
                             33333333666666666666666665554566666666666555555555559999999999988887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.9E-3794237IPR005333Transcription factor, TCP
PROSITE profilePS5136928.32594148IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDQQGAAPSS STSTSTNSSR STSDHPHHAS AAAHHHPFYY AAPAATGATP PPPFMGSLAM  60
VPAATPAGAQ TANHSQSITV AEPPSEKKVA KRPTKDRHTK VDGRGRRIRM PALCAARVFQ  120
LTRELGHKTD GETVEWLLQQ AEPAIVAATG TGTVPANFST LAASLRPGAS SRAAPFQHHL  180
QHQPQHDVAA MLGFHGHHQH QLLPPPPQQQ HHHQHPEAPQ DPGAGEFMRK RYREADDLFK  240
DTGRHQDPEG GGEPAQKPRP APPPTAVSGA MWAVAPNSGA GGGGGAFWMQ PAWAFGAGNT  300
VQAPLQFISR SSFPGGMGDT NLGMLAGLNS CGRSTGGEQQ QHQHQQQPQQ EEEEGQPPEM  360
DQHRRGSNSA GANGHEAGHS AASPQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3610020.0AK361002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1130G02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194047.10.0transcription factor PCF3-like
SwissprotQ53PH24e-98PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A3B6JE740.0A0A3B6JE74_WHEAT; Uncharacterized protein
TrEMBLA0A453HHX70.0A0A453HHX7_AEGTS; Uncharacterized protein
STRINGTraes_4DS_9C2FD9F381.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.15e-50TCP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]