 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Traes_4DS_9C2FD9F381.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
| Family |
TCP |
| Protein Properties |
Length: 385aa MW: 40626.6 Da PI: 7.5353 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Traes_4DS_9C2FD9F381.2 | genome | IWGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 138.3 | 6.2e-43 | 89 | 242 | 3 | 134 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88
++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+eWLlqqa+pai ++tgt++ +a+++ a+s + as +
Traes_4DS_9C2FD9F381.2 89 VAKRPTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETVEWLLQQAEPAIVAATGTGTVPANFStLAASLRPGAS----S 171
689************************************************************9999988854444444444....3 PP
TCP 89 kaaksaa.kskksqksaasalnlakesr........................akarararertrekmrikn 134
+aa++++ ++++q++ a++l ++ +++ a + +r+r+r++++ ++++
Traes_4DS_9C2FD9F381.2 172 RAAPFQHhLQHQPQHDVAAMLGFHGHHQhqllppppqqqhhhqhpeapqdpgAGEFMRKRYREADDLFKDT 242
33333333666666666666666665554566666666666555555555559999999999988887765 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 385 aa
Download sequence Send
to blast |
MDQQGAAPSS STSTSTNSSR STSDHPHHAS AAAHHHPFYY AAPAATGATP PPPFMGSLAM 60
VPAATPAGAQ TANHSQSITV AEPPSEKKVA KRPTKDRHTK VDGRGRRIRM PALCAARVFQ 120
LTRELGHKTD GETVEWLLQQ AEPAIVAATG TGTVPANFST LAASLRPGAS SRAAPFQHHL 180
QHQPQHDVAA MLGFHGHHQH QLLPPPPQQQ HHHQHPEAPQ DPGAGEFMRK RYREADDLFK 240
DTGRHQDPEG GGEPAQKPRP APPPTAVSGA MWAVAPNSGA GGGGGAFWMQ PAWAFGAGNT 300
VQAPLQFISR SSFPGGMGDT NLGMLAGLNS CGRSTGGEQQ QHQHQQQPQQ EEEEGQPPEM 360
DQHRRGSNSA GANGHEAGHS AASPQ
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK361002 | 0.0 | AK361002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1130G02. |
