PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DS_4CF7C00FE.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Dof | ||||||||
Protein Properties | Length: 263aa MW: 27719.6 Da PI: 9.1311 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 111.9 | 2.9e-35 | 63 | 116 | 5 | 58 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 +cprC s +tkfCyynny++sqPr+fC+aCrryWt GG+lrnvP+Gg++rk+ Traes_4DS_4CF7C00FE.1 63 REQCPRCASYDTKFCYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSTRKR 116 579*************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.7E-31 | 64 | 116 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.363 | 64 | 118 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 6.0E-22 | 65 | 111 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 66 | 102 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MEAPLHQLAP MQQALLAHPQ NCKHDAAATM AATDMACLQQ QQQQLMQLQP AAANPNTPSG 60 AAREQCPRCA SYDTKFCYYN NYNTSQPRHF CRACRRYWTL GGSLRNVPIG GSTRKRLRPA 120 PQQAMRRPPV HFGAPPPPMP AQSHSQQAPQ GGLLSSLFAL GAAPLFEGRV GFDLGLGLPG 180 LSQVGLGGSA GEFGLHSLGL RGGHAGTSAP MLWPTAFLDN GNVDTWKVSG GGAAAMWAPE 240 FSPAPAVAQV GGNGMFHGGA QIM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374830 | 0.0 | AK374830.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3077I02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153027.1 | 0.0 | dof zinc finger protein DOF3.1-like | ||||
Refseq | XP_020171952.1 | 0.0 | dof zinc finger protein DOF3.1-like | ||||
TrEMBL | A0A3B6JET0 | 0.0 | A0A3B6JET0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453HEM1 | 0.0 | A0A453HEM1_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DS_4CF7C00FE.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 7e-27 | DOF zinc finger protein 1 |
Publications ? help Back to Top | |||
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