PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_4BD85B5C7.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 638aa    MW: 70427.1 Da    PI: 5.1383
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_4BD85B5C7.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.6e-094014381954
                            HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  Traes_4DS_4BD85B5C7.2 401 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 438
                            664559******************************88 PP
2BELL120.19.7e-39264335172
                   BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                            e+qelq+k akLl +l+eVd++Yk+y +q+q+v+ssF+++ag g+akpYt++Al++iSrhFrcLkdai +q+
  Traes_4DS_4BD85B5C7.2 264 EKQELQNKMAKLLAMLDEVDRKYKHYFHQMQIVVSSFDMIAGSGAAKPYTAVALQTISRHFRCLKDAINDQV 335
                            689******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.5E-55188333IPR006563POX domain
PfamPF075267.1E-50194331IPR006563POX domain
PROSITE profilePS5007112.357379442IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-28381454IPR009057Homeodomain-like
SMARTSM003891.6E-9382446IPR001356Homeobox domain
CDDcd000861.84E-12382443No hitNo description
SuperFamilySSF466892.91E-17383448IPR009057Homeodomain-like
PfamPF059201.0E-17399438IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MSNYYSSPGD ERDPQTMYSP DTGNASYPVP SALGNLLYSN NASSGPYTEF SGIIQPQQNF  60
MELHGHPSEH SSSREPPNMV TSLTEQSSFA PVKDMRNEML MHFMDGAQSG GGGGDLIHND  120
AHSSAQLDFG LLNNPSSASV PSAPGQGLSL SLNTHILAPS YPYWSPKPDL LATQSYQGDE  180
NGMKNMQSEA SRAIRNSKYL KAAQELLDEI VSVWKSIKQN AQKDKVEAGK MDGKDADEVL  240
KSEGVSSNPQ ESTANAEPEI SAAEKQELQN KMAKLLAMLD EVDRKYKHYF HQMQIVVSSF  300
DMIAGSGAAK PYTAVALQTI SRHFRCLKDA INDQVNVIRK KLGEEDNSSG REGKLTRLRY  360
IDQQLRQQRA FQQYGMLQQN AWRPQRGLPE NSVSILRAWL FEHFLHPYPK DSEKLMLARQ  420
TGLTRSQISN WFINARVRLW KPMIEDMYKE ETGEAELDSN SSSDNLPRSK DKMASCEDKE  480
DLKCSMSQGQ AYQTGEFKAN MEMAGLTGAP SSFHNEANSD DGFMNLLLKD QRPGEADGGL  540
LHGDESARFM AYHLAELGGY QNSNVSLTLG LQHAENNLSA PNAHRPGFTA GGEEDIYNTA  600
AAHPGAGAAV ASSDYESTNQ LDQRQQFEPS PLLHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16388445158Homeobox protein Meis1
4xrs_B2e-16388445158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3652800.0AK365280.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149633.10.0BEL1-like homeodomain protein 7
RefseqXP_020149634.10.0BEL1-like homeodomain protein 7
RefseqXP_020149635.10.0BEL1-like homeodomain protein 7
RefseqXP_020149636.10.0BEL1-like homeodomain protein 7
RefseqXP_020149637.10.0BEL1-like homeodomain protein 7
RefseqXP_020149638.10.0BEL1-like homeodomain protein 7
RefseqXP_020149639.10.0BEL1-like homeodomain protein 7
TrEMBLA0A3B6JEP40.0A0A3B6JEP4_WHEAT; Uncharacterized protein
TrEMBLA0A453H2I90.0A0A453H2I9_AEGTS; Uncharacterized protein
STRINGTraes_4DS_4BD85B5C7.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-121BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]