PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_3BE557D5C.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 342aa    MW: 37467.6 Da    PI: 10.3808
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_3BE557D5C.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.82e-27274326354
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYeg 54 
                            D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYe 
  Traes_4DS_3BE557D5C.2 274 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEA 326
                            9*************************988**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-19225270IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-29260326IPR003657WRKY domain
PROSITE profilePS5081126.601267326IPR003657WRKY domain
SuperFamilySSF1182902.48E-23270325IPR003657WRKY domain
SMARTSM007749.9E-30272332IPR003657WRKY domain
PfamPF031063.8E-23274326IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEEVEEANRM AVASCHRVLG LLAQTQDPAQ LRSIALGTDE ACAKFRKVVS LLGNGNEGGG  60
THPRAKLVSR RQTPGFLSQK SFLDNNTPVV VLNSAHPSTS SAQVYPRNSS ILDSQPAHPI  120
GGPPKLVQPL SAHFQFGDSS RYNQFQQHQH QQQKMRAEMF KRSNSGINLK FDSPSGTGTM  180
SSARSFMSSL SMDGSVASLD AKSSSFHLIG GPAMSDPVNA QQAPRRRCSG RGEDGNGKCA  240
ATGRCHCSKR RKLRLKRTIK VPAISNKIAD IPPDEYSWRK YGQKPIKGSP HPRGYYKCSS  300
VRGCPARKHV ERCVDDPSML IVTYEASVKW EDAKMLFSLK EV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-17260326267WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6654280.0EU665428.1 Triticum aestivum WRKY16 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149329.10.0protein WRKY1-like isoform X2
SwissprotQ9SR071e-84WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLA0A453HCL20.0A0A453HCL2_AEGTS; Uncharacterized protein
STRINGTraes_4DS_3BE557D5C.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-71WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]