PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_FB8B5AAEB.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 24352.5 Da PI: 6.2311 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.4e-17 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++kGVr ++ +g+Wv+eIr p + +r++lg++ t+e Aa+a++aa ++l+g Traes_4DL_FB8B5AAEB.2 45 QFKGVRMRS-WGSWVSEIRAP-----HqkRRIWLGSYATPEAAARAYDAALLCLKG 94 69****998.**********7.....335************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-28 | 44 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-19 | 45 | 103 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.92E-17 | 45 | 101 | No hit | No description |
SMART | SM00380 | 9.4E-35 | 45 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.68 | 45 | 102 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-10 | 46 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-7 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-7 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:1900030 | Biological Process | regulation of pectin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MVKNHPGSGT SRCDAAAAMA ESGGGGGTAT LCGGGSRQPA MAVRQFKGVR MRSWGSWVSE 60 IRAPHQKRRI WLGSYATPEA AARAYDAALL CLKGSDAVLN FPSSSSASPS SPHSLPSPAD 120 DLSPRSIQRA AVAAAAAFEA TRIVAGVVDD SCSSSAEATT PTSVSVSTLG SADVQEHTTS 180 SMSAAASAGS PAGDHDELWT ELDAFASPKL MDLIAAGHAT PFSSTWEEPX XRLWSFC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356733 | 0.0 | AK356733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1039C08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189509.1 | 1e-129 | ethylene-responsive transcription factor ERF014-like | ||||
TrEMBL | A0A3B6HPM9 | 1e-127 | A0A3B6HPM9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446QRC6 | 1e-127 | A0A446QRC6_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453IGD0 | 1e-127 | A0A453IGD0_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DL_FB8B5AAEB.2 | 1e-167 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10830 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77640.1 | 7e-20 | ERF family protein |
Publications ? help Back to Top | |||
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