PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 115aa MW: 13514.2 Da PI: 6.5534

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DL_F6ADA799C.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.2	3.7e-20	64	115	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ eq+++Le+ Fe +++++ e+++++A+ lgL rqV vWFqNrRa++k Traes_4DL_F6ADA799C.1 64 RRLALEQVRALERSFETDNKLDPERKARIARDLGLHPRQVAVWFQNRRARWK 115 467789*********************************************9 PP
2	HD-ZIP_I/II	89.3	4.7e-29	62	115	2	55
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk 55 kkrrl+ eqv++LE+sFe+++kL+perK+++ar+Lgl+prqvavWFqnrRAR+k Traes_4DL_F6ADA799C.1 62 KKRRLALEQVRALERSFETDNKLDPERKARIARDLGLHPRQVAVWFQNRRARWK 115 9****************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.63E-18	58	115	IPR009057	Homeodomain-like
SMART	SM00389	2.4E-13	60	115	IPR001356	Homeobox domain
CDD	cd00086	7.20E-14	62	115	No hit	No description
PROSITE profile	PS50071	16.633	62	115	IPR001356	Homeobox domain
Pfam	PF00046	2.0E-17	63	115	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.6E-20	69	115	IPR009057	Homeodomain-like
PRINTS	PR00031	1.0E-5	88	97	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	92	115	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.0E-5	97	113	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MKRQIKRPTR SQESPEPGEK LAFAEKENLL AAYMEHDEPE LAEADEEEEE EERAMSCGLG 60 GKKRRLALEQ VRALERSFET DNKLDPERKA RIARDLGLHP RQVAVWFQNR RARWK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353965	1e-161	AK353965.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1004B20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190062.1	3e-75	homeobox-leucine zipper protein HOX13-like
Swissprot	A2XDD6	1e-35	HOX13_ORYSI; Homeobox-leucine zipper protein HOX13
TrEMBL	A0A3B6JPW5	5e-75	A0A3B6JPW5_WHEAT; Uncharacterized protein
TrEMBL	A0A453IZ72	3e-75	A0A453IZ72_AEGTS; Uncharacterized protein
STRING	Traes_4AL_99A941299.1	2e-74	(Triticum aestivum)
STRING	Traes_4DL_F6ADA799C.1	5e-77	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4283	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	5e-25	homeobox protein 6

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]