PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4DL_E6F4A32C9.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Nin-like

Protein Properties

Length: 692aa MW: 76981 Da PI: 6.4204

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DL_E6F4A32C9.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	87.1	1.5e-27	374	424	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+k+F++++k+AAk+Lgvc+T+LKriCR++GI+RWP+Rkik++ Traes_4DL_E6F4A32C9.1 374 EKTVSLQELRKHFAGSLKEAAKNLGVCPTTLKRICRHHGIDRWPSRKIKKV 424 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.688	363	444	IPR003035	RWP-RK domain
Pfam	PF02042	2.8E-25	376	424	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.57E-22	589	681	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.1E-23	594	677	No hit	No description
PROSITE profile	PS51745	22.391	596	678	IPR000270	PB1 domain
SMART	SM00666	2.4E-25	596	678	IPR000270	PB1 domain
Pfam	PF00564	5.7E-17	597	677	IPR000270	PB1 domain
CDD	cd06407	1.60E-39	597	677	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MPVFERRTGA CLGVVELVMT TQKINYNAEI DNICNALKEV DLRGSDVSSD PRAQVVDTSY 60 RAIVPEIAHV LKAVCETHKL PLAQTWIPCV CQAKRASRHS DEKYKYCVST VDEACYVRDA 120 AMTGFHQACS EHHLFRGEGV VGTALGTNEP CFCPDITAYS KVQYPLSHYA KLFGLRAAVA 180 IRLRSVKTGS MDLILEFFLP NNCINSEEQG NMLNSLSNTI QQASCTLRVV GVKELANDGS 240 PETSSPTPPE VCDKPAEILD ELHTSGINVP ARTTSVDASE EVSSWIASLV DVQNNGVQGE 300 TDCGLPFGFR KQEDEGFSVT AGWPTSPVLV PEDKSFFPGF KKHEEYEAKG SPFSSDRSLS 360 NSDKAIEKRR TKIEKTVSLQ ELRKHFAGSL KEAAKNLGVC PTTLKRICRH HGIDRWPSRK 420 IKKVGHSLKK LQMVIDSVHG AEGTVRLSSL YENFTKTTWS ERELQGDLSY PASEQKVQLE 480 PSVPDRQCES RFSPRTSGSN SLSPTYSQSS NSSLGCSSDP KPQQQQSSAP QLAVKQEFFM 540 EENQSSTQMK AASHDELQLF TEEKPVTLCR SQSHMLFSEH KPMENMSGMQ EAKPDSLKIK 600 AMYGEERCIF RLQPSWGFEK LKEEIAKRFG ISWEVYDLKY LDDESEWVLL TCDADLLECI 660 DVYKSSSAKT VRISVNPAVQ PVLRGSFGHI QP

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MPVFERRTGA CLGVVELVMT TQKINYNAEI DNICNALKEV DLRGSDVSSD PRAQVVDTSY  60
RAIVPEIAHV LKAVCETHKL PLAQTWIPCV CQAKRASRHS DEKYKYCVST VDEACYVRDA  120
AMTGFHQACS EHHLFRGEGV VGTALGTNEP CFCPDITAYS KVQYPLSHYA KLFGLRAAVA  180
IRLRSVKTGS MDLILEFFLP NNCINSEEQG NMLNSLSNTI QQASCTLRVV GVKELANDGS  240
PETSSPTPPE VCDKPAEILD ELHTSGINVP ARTTSVDASE EVSSWIASLV DVQNNGVQGE  300
TDCGLPFGFR KQEDEGFSVT AGWPTSPVLV PEDKSFFPGF KKHEEYEAKG SPFSSDRSLS  360
NSDKAIEKRR TKIEKTVSLQ ELRKHFAGSL KEAAKNLGVC PTTLKRICRH HGIDRWPSRK  420
IKKVGHSLKK LQMVIDSVHG AEGTVRLSSL YENFTKTTWS ERELQGDLSY PASEQKVQLE  480
PSVPDRQCES RFSPRTSGSN SLSPTYSQSS NSSLGCSSDP KPQQQQSSAP QLAVKQEFFM  540
EENQSSTQMK AASHDELQLF TEEKPVTLCR SQSHMLFSEH KPMENMSGMQ EAKPDSLKIK  600
AMYGEERCIF RLQPSWGFEK LKEEIAKRFG ISWEVYDLKY LDDESEWVLL TCDADLLECI  660
DVYKSSSAKT VRISVNPAVQ PVLRGSFGHI QP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164886.1	0.0	protein NLP1-like
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A453J210	0.0	A0A453J210_AEGTS; Uncharacterized protein
STRING	Traes_4DL_E6F4A32C9.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	1e-163	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]