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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Traes_4DL_E50C77AEC.3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family |
GRAS |
| Protein Properties |
Length: 536aa MW: 59615.9 Da PI: 6.1149 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Traes_4DL_E50C77AEC.3 | genome | IWGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 411.6 | 7.3e-126 | 165 | 536 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88
l++++++c +av++++ + + l+++l++++s +g+p+qRl ay++e+L ar +++++ lyk+l+++e ++ + se +++++l+++++
Traes_4DL_E50C77AEC.3 165 LKQVIVACGKAVDENNCH-EDLLISELQKMVSVSGEPIQRLGAYMLEGLVARRYSTGHALYKSLKCKEPQP-TNSELMSYMHLLYDIC 250
578999******996655.58899********************************************986.567888999******* PP
GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
P+++f+++ aN aI eav+ge+ +HiiDf+i qG QW++++qaLa+R++gpp lRiTg+++++s + l +g+rL ++A+++ +
Traes_4DL_E50C77AEC.3 251 PFFRFGYMSANGAIAEAVKGENFIHIIDFQIAQGSQWVTMIQALAARASGPPYLRITGIDDSDSAyaRGGGLDIVGRRLCNIAQSCCL 338
*************************************************************988899999****************** PP
GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
pfefn+ v + ++++le+L+++ gEa+aVn+++qlh+++desv++e++rd++L++vkslsP+vv++veqea++n+++F+ r +e+l+
Traes_4DL_E50C77AEC.3 339 PFEFNA-VNAASHEVTLEHLDIRMGEAIAVNFAYQLHHTPDESVCIENHRDRILRMVKSLSPRVVTLVEQEANTNTAPFFSRYMETLD 425
******.79999**************************************************************************** PP
GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
yy+a+f+++++ pr+++ r++ E+++++r+ivn++acegaer+erhe ++kWr+r+ +aGF+p+pls +++++++ll+ ++s y+
Traes_4DL_E50C77AEC.3 426 YYTAMFEAIDVACPRDDKVRMSTEQHCVARDIVNLIACEGAERVERHEPFGKWRSRFAMAGFRPYPLSALVNNTIRTLLNDYNSY-YK 512
***********************************************************************************66.** PP
GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
+ee++g ++lgWk+r+Lv+ SaWr
Traes_4DL_E50C77AEC.3 513 LEEKDGVIYLGWKNRKLVVSSAWR 536
***********************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 536 aa
Download sequence Send
to blast |
MSAKASNMSY RYPDNSQIPY YSSSMHVGGN GTCYVQQNHE DHHYVSSDDG SQNSDPKSQV 60
IHPQYCTLES SSANCVYAAH SSTSPQCRSG SHISVHDSHS DHTYDSPASG ITEVPGLGFT 120
TLQELADALF GSDSDAVSSD RSLVIGAAMH QSNWRELLGI SSGDLKQVIV ACGKAVDENN 180
CHEDLLISEL QKMVSVSGEP IQRLGAYMLE GLVARRYSTG HALYKSLKCK EPQPTNSELM 240
SYMHLLYDIC PFFRFGYMSA NGAIAEAVKG ENFIHIIDFQ IAQGSQWVTM IQALAARASG 300
PPYLRITGID DSDSAYARGG GLDIVGRRLC NIAQSCCLPF EFNAVNAASH EVTLEHLDIR 360
MGEAIAVNFA YQLHHTPDES VCIENHRDRI LRMVKSLSPR VVTLVEQEAN TNTAPFFSRY 420
METLDYYTAM FEAIDVACPR DDKVRMSTEQ HCVARDIVNL IACEGAERVE RHEPFGKWRS 480
RFAMAGFRPY PLSALVNNTI RTLLNDYNSY YKLEEKDGVI YLGWKNRKLV VSSAWR
|
| Functional Description ? help
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| Source |
Description |
| UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK251704 | 0.0 | AK251704.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf124m13, mRNA sequence. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Day RB, et al.
Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
Plant Mol. Biol., 2004. 54(2): p. 261-72
[PMID:15159627] - Brenchley R, et al.
Analysis of the bread wheat genome using whole-genome shotgun sequencing.
Nature, 2012. 491(7426): p. 705-10
[PMID:23192148] - Tanabe S, et al.
The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
[PMID:26287768]
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