PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_D96E9236F.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 164aa MW: 17491.2 Da PI: 10.1332 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.2 | 2e-13 | 104 | 141 | 4 | 45 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAaka 45 +G+r+++ +g+W+AeIrdp + +r +lg+f+ta++Aa+a Traes_4DL_D96E9236F.1 104 HGIRQRP-WGKWAAEIRDPH----KgTRAWLGTFDTADDAARA 141 6******.**********72....35***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 16.054 | 102 | 159 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-11 | 102 | 147 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 103 | 114 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-20 | 104 | 144 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-7 | 104 | 141 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-13 | 104 | 143 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.6E-9 | 125 | 141 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MCGGAILAEL IPPSAGRASK QVAAGRASPK KAGKSKGQKY GSVADVDDFE AAFENFDDDL 60 DLQAEEDGDD HVVFASRPAF SPAYDGGRRA VPAASKKKSV RPLHGIRQRP WGKWAAEIRD 120 PHKGTRAWLG TFDTADDAAR AXQQGQGQLP RRGQGRGAPA PRQP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ102383 | 4e-78 | DQ102383.2 Hordeum vulgare root abundant factor (RAF) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175335.1 | 3e-95 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A3B6JPR1 | 3e-94 | A0A3B6JPR1_WHEAT; Ethylene response factor | ||||
STRING | Traes_4DL_D96E9236F.1 | 1e-112 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7987 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 4e-18 | related to AP2 2 |
Publications ? help Back to Top | |||
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