PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_B6034D454.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 311aa    MW: 34496.1 Da    PI: 6.2376
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_B6034D454.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78e-082612942154
                            HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            k +yp+++++++L +++gL+ +q+ +WF N+R +
  Traes_4DL_B6034D454.2 261 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 294
                            579*****************************87 PP
2ELK27.76.2e-10215236122
                    ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                            ELK +L++++++++g++++E++
  Traes_4DL_B6034D454.2 215 ELKIELKQGFKSRIGDVREEIL 236
                            9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.3E-144690IPR005540KNOX1
PfamPF037901.2E-134888IPR005540KNOX1
SMARTSM012561.4E-24101156IPR005541KNOX2
PfamPF037918.6E-19104155IPR005541KNOX2
SMARTSM011880.0049215236IPR005539ELK domain
PfamPF037892.2E-6215236IPR005539ELK domain
PROSITE profilePS512139.289215235IPR005539ELK domain
PROSITE profilePS5007111.71235298IPR001356Homeobox domain
SMARTSM003894.2E-10237302IPR001356Homeobox domain
SuperFamilySSF466893.64E-16237301IPR009057Homeodomain-like
CDDcd000861.10E-11238299No hitNo description
Gene3DG3DSA:1.10.10.609.2E-25242301IPR009057Homeodomain-like
PfamPF059208.1E-18255294IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MQGVGDQGGG MEMSFGGGGG RGECSSSSAA AVAVAAASAA EAEERQLLKG EMAVHPLCEQ  60
LVAAHVGCLR VATPIDHLPL IDAQLAQSSG LLHSYSAHHR PFLSPHDKQE LDSFLAQYLM  120
LLCSFREQLQ QHVRVHAVEA VMACREIEQS LQDLTGASLE EGTGATMSED EDEGPPMIME  180
AAPMDMSSNG HDMMGFGPLV PTDTERSLME RVRQELKIEL KQGFKSRIGD VREEILRKRR  240
AGKLPGDTTT ILKQWWQEHA KWPYPTEDDK AKLVEETGLQ LKQINNWFIN QRKRNWHNNS  300
QTSTLKSKRK R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291310RKRNWHNNSQTSTLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3695360.0AK369536.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2093A15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184577.10.0homeobox protein knotted-1-like 3
SwissprotQ94LW30.0KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A3B6JNH70.0A0A3B6JNH7_WHEAT; Uncharacterized protein
STRINGTraes_4DL_B6034D454.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-145KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]