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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Traes_4DL_964466BEC.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family |
M-type_MADS |
Protein Properties |
Length: 83aa MW: 9787.31 Da PI: 12.1969 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Traes_4DL_964466BEC.1 | genome | IWGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 89 | 2.6e-28 | 31 | 80 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rienk+ rqvtf+kRrng+lKKA+ELS LCdaeva++ifs g+l+e+ss
Traes_4DL_964466BEC.1 31 RIENKTTRQVTFTKRRNGLLKKAYELSLLCDAEVALVIFSGGGRLFEFSS 80
8***********************************************96 PP
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 3e-22 | 22 | 83 | 1 | 62 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-22 | 22 | 83 | 1 | 62 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-22 | 22 | 83 | 1 | 62 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-22 | 22 | 83 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-22 | 22 | 83 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-22 | 22 | 83 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-22 | 22 | 83 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-22 | 22 | 83 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-22 | 22 | 83 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-22 | 22 | 83 | 1 | 62 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AJ249145 | 5e-88 | AJ249145.1 Hordeum vulgare mRNA for MADS-box protein 7 (m7 gene). |
GenBank | AK250344 | 5e-88 | AK250344.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf78o03, mRNA sequence. |