 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Traes_4DL_88ABAD6C0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 330aa MW: 36411.5 Da PI: 6.6605 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Traes_4DL_88ABAD6C0.1 | genome | IWGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.7 | 4.2e-18 | 117 | 170 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k
Traes_4DL_88ABAD6C0.1 117 KKRRLNVEQVRTLEKNFEVANKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 170
4568999**********************************************9 PP
|
| 2 | HD-ZIP_I/II | 130.6 | 6.2e-42 | 116 | 206 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88
ekkrrl+ eqv++LE++Fe +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k+en++L +++++L+
Traes_4DL_88ABAD6C0.1 116 EKKRRLNVEQVRTLEKNFEVANKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFDAVKAENDALLSHNKKLQ 203
69************************************************************************************** PP
HD-ZIP_I/II 89 eel 91
+e+
Traes_4DL_88ABAD6C0.1 204 SEI 206
987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009744 | Biological Process | response to sucrose |
| GO:0048826 | Biological Process | cotyledon morphogenesis |
| GO:0080022 | Biological Process | primary root development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 330 aa
Download sequence Send
to blast |
MASNGMASSP SAFFPPNFLL HMQQAPPQHD PQEHHQQHHH HHHEHHLPPP HPQHNPFLPS 60
PQCPSLQDFR GGLSPMLGKR PAMYGGGDGG CGGDEVTGGG ANEEETSDDG SQLGGEKKRR 120
LNVEQVRTLE KNFEVANKLE PERKMQLARA LGLQPRQVAI WFQNRRARWK TKQLEKDYDV 180
LKRQFDAVKA ENDALLSHNK KLQSEILGLK GCREAASELI NLNKETEASC SNRSENSSEI 240
NLDISRTPPS DGPMDAPPSH QQGGGGGGMI PFYPSVARPA GVDIDHLLHA SVPKMEHHHG 300
GPDTASFGNL LCGVDEPPPF WPWADHQQFN
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 164 | 172 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ353856 | 0.0 | DQ353856.1 Triticum aestivum homeodomain-leucine zipper transcription factor TaHDZipI-2 mRNA, complete cds. |
