PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4DL_5E79CC79C.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WOX

Protein Properties

Length: 315aa MW: 32426.1 Da PI: 7.5981

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DL_5E79CC79C.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.7	2.7e-15	33	93	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Traes_4DL_5E79CC79C.1 33 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 93 89***************99***********************************997 PP
2	Wus_type_Homeobox	106.9	1.2e-34	32	95	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q Traes_4DL_5E79CC79C.1 32 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 95 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.256	29	94	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.55E-14	29	101	IPR009057	Homeodomain-like
SMART	SM00389	1.2E-6	31	98	IPR001356	Homeobox domain
Pfam	PF00046	5.1E-13	33	93	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-8	33	100	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MEGGSNSPDG QSSGGSPEER RSSGGRGAGE PVRSRWTPKP EQILILESIF NSGMVNPPKD 60 ETVRIRKLLE RFGAVGDANV FYWFQNRRSR SRRRQRQMQA AAAAAAASSA AAANSLPAAS 120 ATIGLPSGTC SVHPMAIGGG ASHQYEQQAT SSSSSGSTGG SSLGLFAAHG AGVSGAGVGY 180 LQASCGTSSP LASGLMPDVD SGGSDDLFAI SRQMGFVGSP AGSSSAAPNT AVQQQYYSCQ 240 LPAATITVFI NGVPMEVPRG PIDLRAMFGQ DVVLLHSTGT LLPVNDYGIL IQSLQMGESY 300 FLVTIHIASQ VHSSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728413	1e-117	KJ728413.1 Zea mays clone pUT6718 HB transcription factor (HB130) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164667.1	1e-169	WUSCHEL-related homeobox 6-like
Swissprot	Q10M29	1e-106	WOX6_ORYSJ; WUSCHEL-related homeobox 6
TrEMBL	A0A446QVB6	1e-178	A0A446QVB6_TRITD; Uncharacterized protein
STRING	Traes_4DL_5E79CC79C.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	4e-33	WUSCHEL related homeobox 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]