PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_184FFC74B.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 1054aa    MW: 115883 Da    PI: 4.7824
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_184FFC74B.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012944969123
                            EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                            ++C+   C+++F +k +L+ H r+ +
  Traes_4DL_184FFC74B.2 944 FQCEidFCDMTFESKADLRAHERNiC 969
                            89********************9877 PP
2zf-C2H2110.00139971021123
                             EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2    1 ykCp..dCgksFsrksnLkrHirtH 23  
                             +kCp   Cg++F+     + Hir+H
  Traes_4DL_184FFC74B.2  997 FKCPweGCGMTFKWLWAQTEHIRVH 1021
                             89*********************99 PP
3zf-C2H214.20.0001310271053123
                             EEET..TTTEEESSHHHHHHHHHH..T CS
                zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                             y+C+  dCg++F+  s++ rH r+  H
  Traes_4DL_184FFC74B.2 1027 YECSvvDCGQTFRYVSDYSRHRRKfnH 1053
                             89*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035514944966IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.757967996IPR007087Zinc finger, C2H2
SMARTSM003555967991IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280969991IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-6973997IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.68E-169781036No hitNo description
PROSITE profilePS5015713.0279971026IPR007087Zinc finger, C2H2
SMARTSM003552.8E-49971021IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-129981021IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002809991021IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-1010221049IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.57210271054IPR007087Zinc finger, C2H2
SMARTSM003550.06710271053IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028010291053IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1054 aa     Download sequence    Send to blast
MISENELLCS FLKKKLIDNA VLWEPDLLPS STALHSCSSG PKAPLKVDDV HSIESVPKEN  60
SSSDDIASRA GVQPKCMSMD SKSSDAMSTS EAQKLDTDTD DDGDLPFDLS IDSGSLTCVA  120
CGILGFPFMA ILQPSKKALE DMSLVDVERF KLNCEKENHS NAISCSPDDG NSGHPVIAKR  180
PSSPVAESNF SHQNAESDKD GVGLDGPLPP HNNSSHSCSS ENTLNPCINT ETTETKIPSA  240
RFGIEFSKQT GRGDIDAQAT ESCGNTVDWN ISSAFVRPRI FCLQHALEIE ELLEGKGGVH  300
ALIICHADYT KLKALAISIA EEIEFQFDCK DVPLANASKS DLHLINISID DEGYKEDERD  360
WTAQMGLNMK YFAKLRKETP GCQEQPPLSF WKRLDISDKP SPISVVPNLK WLCRRARTPY  420
RVVGYAASRN ATVGPDVVSP AVTKAEMGTS GNAYENAKEQ QTAEQDAPLE PSRLQEADDV  480
ADMHTCSEDI DQDMHCLIGS KRQRTAEQDA PLQPSGLQEA DDVVDMHTCS VDNDQAMHRL  540
IGIPVAVAEY PMMHQVCEGT VSVSTCELDD LVSASTSDDS VCKAYSQDSP GVSDDFTAEQ  600
KSVQSDELTS SVAMSVQQFL VDESMIAEDS SNHENLGCYN VTSECKDKQL QVQQEQENIE  660
LCNNAGRNLA TVVQVDSSHF RDKAVNLKSA IPTESQHEYP RRDAIVLEGM QAALTTVVSE  720
ENRNSVHTEL DSLGILLGAL AEESILADVP GKDEVDDASL TLMTLASIDQ SAGDVAHNEV  780
IETSSSSVGA SLSCRGRTLT NLASDGSLRI QNAEIQNKQE NAEEVGAWNC QGLKNSRGIL  840
DSSANSLSET GKSSGTPNTY QPDILSRSIG SSKRTSIICY VRRKRKQKRK RESQSVGSFA  900
RAPCERLRPR TKPAVIEEPA EQIETAKPSA AATKGKRSKV VELFQCEIDF CDMTFESKAD  960
LRAHERNICT DESCGKRFQS HKYLKRHQCV HRDERPFKCP WEGCGMTFKW LWAQTEHIRV  1020
HTGERPYECS VVDCGQTFRY VSDYSRHRRK FNHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A6e-47944105323132Lysine-specific demethylase REF6
6a58_A6e-47944105323132Lysine-specific demethylase REF6
6a59_A6e-47944105323132Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1880887VRRKRKQK
2884891RKQKRKRE
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157215.10.0lysine-specific demethylase SE14
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A453J1B90.0A0A453J1B9_AEGTS; Uncharacterized protein
TrEMBLA0A453J1C40.0A0A453J1C4_AEGTS; Uncharacterized protein
STRINGTraes_4DL_184FFC74B.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.13e-44relative of early flowering 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]