PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_DD5E68382.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 184aa    MW: 20295.8 Da    PI: 4.5287
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_DD5E68382.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-181565256
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                           +y+GVr +k +g+Wv+eIr+p   gk++r++lg+f ++e+Aa a++ a+++l+g+
  Traes_4BS_DD5E68382.1 15 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAVAHDVAALRLRGH 65
                           69****999.**********8...557**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.1171572IPR001471AP2/ERF domain
CDDcd000181.03E-291572No hitNo description
SuperFamilySSF541716.47E-221572IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-311572IPR001471AP2/ERF domain
SMARTSM003802.7E-351578IPR001471AP2/ERF domain
PfamPF008472.1E-121565IPR001471AP2/ERF domain
PRINTSPR003673.9E-121627IPR001471AP2/ERF domain
PRINTSPR003673.9E-125474IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEVVPDNAGV AAAEQYRGVR KRKWGKWVSE IREPGKKTRI WLGSFESPEM AAVAHDVAAL  60
RLRGHEARLN FPGLVHLFRR PDTAEPDDVR AAALEAAAQV RFRPDLVLQP GGCGSSGGGG  120
FPDRLDDVAW DAMLRSDDLE PESPNMWAEL AEAMLLAPPV WEGSAVDNDE WSQGSLWDPS  180
CWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-171176167ATERF1
3gcc_A3e-171176167ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194566.11e-112ethylene-responsive transcription factor ERF022-like
SwissprotQ9C9I24e-33ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A3B6IPE31e-129A0A3B6IPE3_WHEAT; Uncharacterized protein
TrEMBLA0A446RVG41e-129A0A446RVG4_TRITD; Uncharacterized protein
STRINGTraes_4BS_DD5E68382.11e-130(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.15e-34ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]