PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BS_9928BD91A.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 275aa MW: 29904.2 Da PI: 7.0577

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BS_9928BD91A.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92.6	6.7e-29	8	79	55	128
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +kewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+v s + v +kk Lvfy g+ pkg+kt+W+mheyrl Traes_4BS_9928BD91A.1 8 SKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPVGS--PRPVAIKKALVFYAGKPPKGVKTNWIMHEYRL 79 68**********************************99..779*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.221	1	109	IPR003441	NAC domain
SuperFamily	SSF101941	9.02E-35	7	109	IPR003441	NAC domain
Pfam	PF02365	9.8E-14	11	79	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
AAGGGPDSKE WYFFSPRDRK YPNGSRPNRA AGTGYWKATG ADKPVGSPRP VAIKKALVFY 60 AGKPPKGVKT NWIMHEYRLA DVDRSAAARK KSNNALRLDD WVLCRIYNKK GVIERYDTPD 120 SDVADVKPAP PPAAKIPRQG QYHAGPAMKV ELSDYGFYQQ PSPPATEMLC FDRSGSADRD 180 SNSNHSMPRL HTDSSSSERA LSSPSPDFPS DMDYAESQHA AGLAGGWPGD DWGGVIDDDG 240 FVIDGSLIFD PPSPGAFARD AAAFGDMLTY LQKPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-44	8	115	68	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269\|PubMed:20632034}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269\|PubMed:20632034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357207	0.0	AK357207.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1048E22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163238.1	0.0	NAC domain-containing protein 71-like
Swissprot	Q53NF7	1e-121	NAC71_ORYSJ; NAC domain-containing protein 71
TrEMBL	A0A3B6IN73	0.0	A0A3B6IN73_WHEAT; Uncharacterized protein
TrEMBL	A0A446RWB9	0.0	A0A446RWB9_TRITD; Uncharacterized protein
STRING	Traes_4BS_9928BD91A.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11804	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08790.1	3e-63	NAC family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sperotto RA, et al. Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains. J. Plant Physiol., 2010. 167(17): p. 1500-6 [PMID:20580124] Takasaki H, et al. The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Mol. Genet. Genomics, 2010. 284(3): p. 173-83 [PMID:20632034] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Kan CC,Chung TY,Juo YA,Hsieh MH Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots. BMC Genomics, 2015. 16(1): p. 731 [PMID:26407850]