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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_86704D7461.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 332aa MW: 36359.2 Da PI: 5.1649 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.4e-05 | 5 | 26 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ L+rH r+H Traes_4BS_86704D7461.1 5 KCAKCPREFCSSVALRRHTRVH 26 7*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.014 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MQLTKCAKCP REFCSSVALR RHTRVHRRAL KIDKDFPKNR DHLAAFWDKL TVGQAQAILS 60 LEGVAIEETS ALFILTSLSS WMCKPGYASL PLPYARAGNE LLDLIQTAAS RLPISSNELF 120 IMLDEASENT FLCTNAADAA CVQKFLFDGE VEKVATELKN VVACTSYILE QKLVEAWSAD 180 KAAEALRCQK LLVEEEDAAQ KRQAEIMERK RMKKLRQKEQ RLKDLKDEGT MVQLPQVVDA 240 AASSPGIQSL EATSGPGLDE QGDPQYLRLS APVPPSEDNG CNGEDANCGS GQEMDTGAVF 300 REQAMATSNL DRVENHPPNS TVSGSSATAS KH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 207 | 214 | ERKRMKKL |
2 | 212 | 222 | KKLRQKEQRLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355914 | 0.0 | AK355914.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1027M18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160651.1 | 0.0 | uncharacterized protein LOC109745950 | ||||
TrEMBL | A0A446RNU8 | 0.0 | A0A446RNU8_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BS_86704D746.1 | 0.0 | (Triticum aestivum) | ||||
STRING | Traes_4BS_86704D7461.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8503 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25610.1 | 9e-75 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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