PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_7322F0DC2.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 397aa MW: 42000.4 Da PI: 8.1543 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.6 | 1.2e-32 | 116 | 169 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+e + Traes_4BS_7322F0DC2.4 116 VKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKELD 169 89*************************9.999********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.3E-29 | 116 | 167 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-24 | 117 | 169 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-30 | 117 | 167 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.735 | 118 | 167 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.86E-21 | 265 | 336 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.4E-31 | 269 | 338 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.2E-27 | 278 | 334 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 8.30E-4 | 279 | 332 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MVSIVQLQRR RTEAAASAAP ARSILPDREE RMDLSVPRGE FPIPMHAAAS PYGGIGGGGV 60 AVADHAMDLH HDHANHNGQS QSQAQDMPSP PVAVSEDSSG KKRAAAIAVG AGGPPVKYRE 120 CLKNHAAAIG GNATDGCGEF MPSGEEGSLE ALKCSACGCH RNFHRKELDD FDGDSCASHG 180 YGYGHHAVRR LLGPSVPHHH KSSGGLLVTA DHYGAYAAAR ALPPPPPPPL GHHHQIIMPL 240 NMIQTSESDE MDGSGGGGIM GDGRGGLASG GGGSSSSKKR FRTKFTAEQK GRMLEFAENV 300 GWRLQKLDDA MVQHFCQEIG VKRRVLKVWM HNNKHNLATR QPPTSPTPPQ SQSMPLAMSM 360 PMPLGMSMPM QVPPSQPGPS GHRGPSSPHA HGELKLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-24 | 277 | 336 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361579 | 0.0 | AK361579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1144B18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179853.1 | 0.0 | zinc-finger homeodomain protein 4-like isoform X1 | ||||
Swissprot | Q53N87 | 1e-100 | ZHD4_ORYSJ; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A3B6ILF9 | 0.0 | A0A3B6ILF9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446RVH9 | 0.0 | A0A446RVH9_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BS_7322F0DC2.4 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 3e-57 | homeobox protein 31 |
Publications ? help Back to Top | |||
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