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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Traes_4BS_6A0B5C129.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
| Family |
TCP |
| Protein Properties |
Length: 381aa MW: 40185.2 Da PI: 7.3556 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Traes_4BS_6A0B5C129.1 | genome | IWGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 137.6 | 1e-42 | 89 | 242 | 3 | 134 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgk 89
++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+eWLlqqa+pai ++tgt++ +a+++ a+s + as s+
Traes_4BS_6A0B5C129.1 89 VAKRPTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETVEWLLQQAEPAIVAATGTGTVPANFStLAASLRPGAS---SRV 173
689************************************************************9999977754444444444...222 PP
TCP 90 aaksaakskksqksaasalnlakesr........................akarararertrekmrikn 134
a +++ ++++q++ a++l ++ +++ a + +r+r+r++++ ++++
Traes_4BS_6A0B5C129.1 174 APFQHHLQHQPQHDVAAMLGFHGHHQhqllppppqqqhhhqhpeapqdpgAGEFMRKRYREADDLFKDT 242
222333444555555555555544333444444444444444444444449999999999999888775 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 381 aa
Download sequence Send
to blast |
MDQQGAAPSS STSTSTNSSR STSDHPHHAS AAAHHHPFYY AAAAATGATP PPPFMGSLAM 60
VPAATPAGGQ TANHSQSITV AEPPSEKKVA KRPTKDRHTK VDGRGRRIRM PALCAARVFQ 120
LTRELGHKTD GETVEWLLQQ AEPAIVAATG TGTVPANFST LAASLRPGAS SRVAPFQHHL 180
QHQPQHDVAA MLGFHGHHQH QLLPPPPQQQ HHHQHPEAPQ DPGAGEFMRK RYREADDLFK 240
DTGRHQDPED GGEPAQKSRP APPPTAVSGA MWAVAPNSGA GGGGAFWMQP AWAFGAGNTV 300
QAPLQFISRS SFPGGMGDTN LGMLAGLNSC GRSTGGEQQH QQQPQQEEEE GQPPEMDQHR 360
RGSTSAGANG HDAGHSAASP Q
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK361002 | 0.0 | AK361002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1130G02. |
