PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_270084801.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 658aa MW: 71550.4 Da PI: 4.1217 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.7 | 1.2e-12 | 181 | 222 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE +ll++a + +Gg+ W+ Ia+++ ++t qc +++++ Traes_4BS_270084801.2 181 SWTDEETLLLLEALEIFGGK-WTEIAEHVA-TKTKTQCMLHFLQ 222 7*******************.*********.**********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50934 | 12.129 | 1 | 52 | IPR007526 | SWIRM domain |
SuperFamily | SSF46689 | 1.08E-5 | 3 | 44 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.10 | 4.8E-5 | 4 | 47 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS50135 | 9.687 | 119 | 165 | IPR000433 | Zinc finger, ZZ-type |
SMART | SM00291 | 2.0E-8 | 119 | 163 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57850 | 2.47E-11 | 121 | 155 | No hit | No description |
Pfam | PF00569 | 5.3E-8 | 122 | 158 | IPR000433 | Zinc finger, ZZ-type |
CDD | cd02336 | 8.64E-20 | 123 | 167 | No hit | No description |
PROSITE pattern | PS01357 | 0 | 125 | 151 | IPR000433 | Zinc finger, ZZ-type |
PROSITE profile | PS51293 | 21.06 | 177 | 228 | IPR017884 | SANT domain |
SMART | SM00717 | 2.8E-13 | 178 | 226 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.59E-13 | 178 | 231 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-9 | 179 | 221 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.3E-12 | 181 | 223 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00221 | 199 | 223 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MMKFHANPQL QLEPKDLAEL SVGEVDARQE VFDFLDHWGL INFHPFPPAG LEESKPEESQ 60 SDSHNEEKAS LIEKLFKFEP VQSYMIPLPN KGEGEIPVPL PTLLPDPVLV EDVIAAAEPS 120 VEYHCNSCSV DCSGKRYHCR TQADFDLCSN CYNEAKFDAG MSKTDFILMD STEVSGARGT 180 SWTDEETLLL LEALEIFGGK WTEIAEHVAT KTKTQCMLHF LQMQIEDRFH DGDDIHQNIH 240 ESTEQALVEK GTPEVPEKME TEEKVEGKDT KDEKPSEKTE GNHTEEKTEE GSVVENKDAK 300 NSGGADSVTI PNVDEPKPSS DTDIAKENSV NLDTSEKNAP DDAIDISGEN ASNDAIDILK 360 SAFEAAGNFP GHEGSFADAG NPVMALAAFL AGLVEDDSAT TSCCSSLKAI SEDSPALQLA 420 SRHCYILEDP PSDLKDIFVT VSNTNKDEDQ AKGEDQAKDE DMVIDSTGNE KKDINVKEDN 480 TVSVEKQNSP SISPKDHKES DTKNVSCDDE APTVEPKSNK AKETDDPIPL VDKSASNDTK 540 VPSSSTKDSV APENNANGCG LSASQEVVAG STTCATNPEL LKDKPSSEVE PDDDSPSQGK 600 MELNKTEDAV AAPTAVQEDE KTHTLRNGRL EEDFVATLTC VNCTFKQLCW SSHAGSQT |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362898 | 0.0 | AK362898.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010P22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166067.1 | 0.0 | SWI/SNF complex subunit SWI3D isoform X1 | ||||
TrEMBL | A0A3B6ILL5 | 0.0 | A0A3B6ILL5_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446RSM1 | 0.0 | A0A446RSM1_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BS_270084801.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4542 | 12 | 14 |
Publications ? help Back to Top | |||
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