PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_179F7B2E1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NF-YB | ||||||||
Protein Properties | Length: 222aa MW: 23186.1 Da PI: 8.4277 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 42.6 | 1.5e-13 | 112 | 182 | 26 | 96 |
NF-YB 26 kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 + kda e + fi ++++ a+d c+ kr+tin++d++ al ++ f ++vepl++ l+++r +++ Traes_4BS_179F7B2E1.1 112 IVNKDAMAAFAEGARIFIHYLSATANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALEEFRSRNAA 182 4789999999********************************************************87665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.8E-32 | 78 | 216 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.49E-25 | 82 | 215 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.0E-7 | 113 | 157 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MAGEAKEPEA AAQGEGSKAK AKKPKAAAAA AAQDGEGAKA KAKKPKAAAA AEEGEGAKAK 60 AKKPKAAGAP VAAMAEAEVE ELPKAIVRRL VKDKLARAAS GGEGAEGGAE VIVNKDAMAA 120 FAEGARIFIH YLSATANDVC KDGKRQTINA EDVFKALDEI EFPEFVEPLR TALEEFRSRN 180 AARKPASGKK QSEKKRKLDK EAVPEEQNGA ADEANADKDE FF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371068 | 0.0 | AK371068.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2124A02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188631.1 | 8e-87 | DNA polymerase epsilon subunit 3-like isoform X2 | ||||
TrEMBL | A0A3B6HXJ7 | 6e-95 | A0A3B6HXJ7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446RB99 | 6e-95 | A0A446RB99_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BS_179F7B2E1.1 | 1e-147 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10414 | 37 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 1e-32 | nuclear factor Y, subunit B11 |
Publications ? help Back to Top | |||
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