PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_F6C3B5069.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HSF | ||||||||
Protein Properties | Length: 70aa MW: 8228.25 Da PI: 7.6176 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 26.2 | 2.1e-08 | 1 | 37 | 57 | 102 |
HHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 57 LnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102 Ln+YgF+kv+ ++ weF+h F +g+++ll +i r+++ Traes_4BL_F6C3B5069.1 1 LNTYGFRKVDPDR---------WEFAHACFLRGQTHLLPRIVRRRT 37 8*********999.........********************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.2E-8 | 1 | 35 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 8.71E-8 | 1 | 35 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.0E-6 | 1 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
LNTYGFRKVD PDRWEFAHAC FLRGQTHLLP RIVRRRTGGG RRAKDSHDEE EDEDISSKML 60 AMEVARLKEE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT724956 | 1e-114 | KT724956.1 Triticum aestivum cultivar HD2985 heat-responsive transcription factor HSF85 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196612.1 | 2e-28 | heat stress transcription factor C-2a-like | ||||
Swissprot | Q6EUG4 | 1e-20 | HFC2A_ORYSJ; Heat stress transcription factor C-2a | ||||
TrEMBL | A0A125RTZ4 | 2e-42 | A0A125RTZ4_WHEAT; Heat-responsive transcription factor HSF85 | ||||
TrEMBL | A0A3B6J0E8 | 2e-42 | A0A3B6J0E8_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4BL_F6C3B5069.1 | 2e-45 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17750.1 | 1e-14 | heat shock factor 1 |
Publications ? help Back to Top | |||
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