PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BL_F6C3B5069.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HSF

Protein Properties

Length: 70aa MW: 8228.25 Da PI: 7.6176

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BL_F6C3B5069.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	26.2	2.1e-08	1	37	57	102
HHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 57 LnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102 Ln+YgF+kv+ ++ weF+h F +g+++ll +i r+++ Traes_4BL_F6C3B5069.1 1 LNTYGFRKVDPDR---------WEFAHACFLRGQTHLLPRIVRRRT 37 8*******999.........******************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.2E-8	1	35	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	8.71E-8	1	35	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.0E-6	1	35	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
LNTYGFRKVD PDRWEFAHAC FLRGQTHLLP RIVRRRTGGG RRAKDSHDEE EDEDISSKML 60 AMEVARLKEE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT724956	1e-114	KT724956.1 Triticum aestivum cultivar HD2985 heat-responsive transcription factor HSF85 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196612.1	2e-28	heat stress transcription factor C-2a-like
Swissprot	Q6EUG4	1e-20	HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBL	A0A125RTZ4	2e-42	A0A125RTZ4_WHEAT; Heat-responsive transcription factor HSF85
TrEMBL	A0A3B6J0E8	2e-42	A0A3B6J0E8_WHEAT; Uncharacterized protein
STRING	Traes_4BL_F6C3B5069.1	2e-45	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17750.1	1e-14	heat shock factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]