PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_F1BECD544.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 328aa    MW: 37091.8 Da    PI: 7.5715
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_F1BECD544.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.16.4e-48311652128
                    NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                             pG+rFhPtdeelv++yL++kv+gk+l++ evi+e+diyk++PwdLp  ++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg 
  Traes_4BL_F1BECD544.1  31 LPGYRFHPTDEELVTFYLRRKVAGKPLSI-EVIREMDIYKHDPWDLPkGSTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGI 117
                            69***************************.99***************445556899******************************** PP

                    NAM  89 dkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            d++++s+        +g l+glkk+Lv+y g+  k +ktdW+mhe+rl
  Traes_4BL_F1BECD544.1 118 DRPIYSAasggsgsgSGVLIGLKKSLVYYLGKFGKCTKTDWMMHEFRL 165
                            ******9888777666666***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-5430192IPR003441NAC domain
PROSITE profilePS5100553.40930193IPR003441NAC domain
PfamPF023651.4E-2432165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSAMEMEKLI SEEKVVLGGA GDEEEEDDVV LPGYRFHPTD EELVTFYLRR KVAGKPLSIE  60
VIREMDIYKH DPWDLPKGST VGGEKEWYFF CLRGRKYRNS IRPNRVTGSG FWKATGIDRP  120
IYSAASGGSG SGSGVLIGLK KSLVYYLGKF GKCTKTDWMM HEFRLLPSAP AATNASPSMQ  180
EAEVWTICRI FRRTITYRKQ QTWRTAPTPS AADQSSNTGS FESSEVGHEY MNYLQAPAPI  240
APCIPPQQHQ QYVSQMDAVN SNNFFYEDTM HNQQFQGQWN AAPAAPEPEE KPQNTPERFL  300
RGRGVFGGDR EDDGGHRYGR VLRLRKLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-483219919171NO APICAL MERISTEM PROTEIN
1ut4_B2e-483219919171NO APICAL MERISTEM PROTEIN
1ut7_A2e-483219919171NO APICAL MERISTEM PROTEIN
1ut7_B2e-483219919171NO APICAL MERISTEM PROTEIN
4dul_A2e-483219919171NAC domain-containing protein 19
4dul_B2e-483219919171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3604320.0AK360432.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1118B07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164300.10.0transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK555e-81NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A3B6IY940.0A0A3B6IY94_WHEAT; Uncharacterized protein
STRINGTraes_4BL_F1BECD544.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-72NAC domain containing protein 42
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  3. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  4. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  5. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  6. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]