PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_EFEC50B26.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 311aa MW: 34205.8 Da PI: 8.0374 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.6 | 6.9e-30 | 88 | 144 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK v+g e+prsYY+Ct+a+Cpvkkkve+sa +++++i+Y+g+Hnh+ Traes_4BL_EFEC50B26.2 88 DDGYNWRKYGQKAVQGGEYPRSYYKCTHASCPVKKKVEHSA-YGQITQIIYRGQHNHQ 144 8****************************************.9**************8 PP | |||||||
2 | WRKY | 37.6 | 4.3e-12 | 254 | 276 | 1 | 23 |
---SS-EEEEEEE--TT-SS-EE CS WRKY 1 ldDgynWrKYGqKevkgsefprs 23 ldDgy+WrKYGqK+vkg+++pr Traes_4BL_EFEC50B26.2 254 LDDGYRWRKYGQKVVKGNPHPRM 276 59********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.9E-27 | 82 | 146 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-24 | 85 | 146 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-30 | 87 | 145 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.7E-23 | 88 | 144 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.24 | 88 | 146 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.8E-13 | 241 | 278 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-10 | 246 | 278 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.939 | 249 | 284 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.8E-7 | 254 | 298 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-8 | 255 | 278 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MSHQQALAQV TAQAVHSQYT VGSQADYSLP FSSATSALTS QFIKSSANVT SMKETATLPL 60 HTVNDNLKSN EVSQGFQTLA LTVDKPADDG YNWRKYGQKA VQGGEYPRSY YKCTHASCPV 120 KKKVEHSAYG QITQIIYRGQ HNHQRPPKRR SKDGGNLLNE DDFPENRDAL TRSEPGSQDH 180 SGKVEVSNDG ITGLSMSKRR DGGDQSSGSS DREEDNDEAG DDNGDAGIVN ANKRHVPVPA 240 QRIIVQTTSE IDLLDDGYRW RKYGQKVVKG NPHPRMVFEK VDSSFHPGIL DLSHLHTPCC 300 ILVVKGRGVG R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-16 | 87 | 147 | 14 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 149 | RPPKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR827395 | 0.0 | KR827395.1 Triticum aestivum WRKY44 transcriptional factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193919.1 | 0.0 | probable WRKY transcription factor 4 | ||||
Refseq | XP_020193920.1 | 0.0 | probable WRKY transcription factor 4 | ||||
TrEMBL | A0A446S1P0 | 0.0 | A0A446S1P0_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BL_EFEC50B26.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1345 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-50 | WRKY DNA-binding protein 3 |
Publications ? help Back to Top | |||
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