PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Traes_4BL_CDCFB216C.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 139aa MW: 14359.2 Da PI: 7.5188

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BL_CDCFB216C.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	71.6	1.5e-22	1	124	129	250
GRAS 129 lqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll 214 +qa++sRp +pp+lRiT++ ++ g +++++e g+rLa fA ++g pf+f ++ e +++ + r+ +gE+l+ n++l+ Traes_4BL_CDCFB216C.1 1 MQAMTSRPdgVSPPHLRITAITRSGGGGARAVQEAGRRLAAFAGSIGQPFSFGHCRLDSDERFRPATVRMVKGETLVANCILHQAAAT 88 9*****6666*******7777**********************99999******************99665554 PP GRAS 215 desvsles.erdevLklvkslsPkvvvvveqeadhns 250 +v + ++L + sl +kvv+vve+e + ++ Traes_4BL_CDCFB216C.1 89 -TTVRRPTgSVASFLTGMASLGAKVVTVVEEEGEAEK 124 .333333347899*****************98754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	5.1E-20	1	124	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	17.165	1	139	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MQAMTSRPDG VSPPHLRITA ITRSGGGGAR AVQEAGRRLA AFAGSIGQPF SFGHCRLDSD 60 ERFRPATVRM VKGETLVANC ILHQAAATTT VRRPTGSVAS FLTGMASLGA KVVTVVEEEG 120 EAEKSEEEAS DAAAGGFVG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269\|PubMed:15961668}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269\|PubMed:15961668}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020151677.1	2e-89	nodulation-signaling pathway 2 protein-like
Refseq	XP_020163850.1	2e-90	nodulation-signaling pathway 2 protein-like
Swissprot	Q5NE24	2e-33	NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBL	A0A3B6ISN6	4e-89	A0A3B6ISN6_WHEAT; Uncharacterized protein
TrEMBL	A0A446S8M7	4e-89	A0A446S8M7_TRITD; Uncharacterized protein
STRING	Traes_4AS_19FA06316.1	1e-89	(Triticum aestivum)
STRING	Traes_4BL_CDCFB216C.1	9e-95	(Triticum aestivum)
STRING	TRIUR3_13261-P1	1e-89	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7580	31	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	3e-25	GRAS family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513]