PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_C5C94B24F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 314aa    MW: 34693.3 Da    PI: 6.2376
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_C5C94B24F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.1e-082642972154
                            HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            k +yp+++++++L +++gL+ +q+ +WF N+R +
  Traes_4BL_C5C94B24F.1 264 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 297
                            579*****************************87 PP
2ELK27.76.2e-10218239122
                    ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                            ELK +L++++++++g++++E++
  Traes_4BL_C5C94B24F.1 218 ELKIELKQGFKSRIGDVREEIL 239
                            9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.3E-144791IPR005540KNOX1
PfamPF037901.2E-134989IPR005540KNOX1
SMARTSM012562.9E-22102159IPR005541KNOX2
PfamPF037912.6E-16105158IPR005541KNOX2
PROSITE profilePS512139.289218238IPR005539ELK domain
PfamPF037892.2E-6218239IPR005539ELK domain
SMARTSM011880.0049218239IPR005539ELK domain
PROSITE profilePS5007111.71238301IPR001356Homeobox domain
SuperFamilySSF466893.72E-16240304IPR009057Homeodomain-like
SMARTSM003894.2E-10240305IPR001356Homeobox domain
CDDcd000862.32E-11241302No hitNo description
Gene3DG3DSA:1.10.10.609.4E-25245304IPR009057Homeodomain-like
PfamPF059208.2E-18258297IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MQGVGDQGGG MEMSFGGGGG GGGECSSSSA AAVAVAAASA AEAEERQLLK GEMAVHPLCE  60
QLVAAHVGCL RVATPIDHLP LIDAQLAQSS GLLHSYAAHH RPFLSPHDKQ ELDSFLVRAQ  120
YLMLLCSFRE QLQQHVRVHA VEAVMACREI EQSLQDLTGA SLEEGTGATM SEDEDEGPPM  180
IMEAAPMDMS SNGHDMMGFG PLVPTDTERS LMERVRQELK IELKQGFKSR IGDVREEILR  240
KRRAGKLPGD TTTILKQWWQ EHAKWPYPTE DDKAKLVEET GLQLKQINNW FINQRKRNWH  300
NNSQTSTLKS KRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294313RKRNWHNNSQTSTLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3695360.0AK369536.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2093A15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184577.10.0homeobox protein knotted-1-like 3
SwissprotQ94LW30.0KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A3B6JNH70.0A0A3B6JNH7_WHEAT; Uncharacterized protein
STRINGTraes_4BL_C5C94B24F.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-144KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]