PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_B8FFB0854.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 97aa    MW: 11214.9 Da    PI: 11.527
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_B8FFB0854.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.85e-221160251
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           rie+ + rqv fskRr g++KKA+E   L daeva+++fs+ g+lyey+s
  Traes_4BL_B8FFB0854.2 11 RIEDRTSRQVRFSKRRSGLFKKAFEFGLLYDAEVALLVFSPAGRLYEYAS 60
                           8***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.268262IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-25261IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-24478IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-24424IPR002100Transcription factor, MADS-box
PfamPF003197.4E-231158IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-242439IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-243960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MARRGPVELR RIEDRTSRQV RFSKRRSGLF KKAFEFGLLY DAEVALLVFS PAGRLYEYAS  60
SSQSLPKSIS NRHPKTAPHA KIRVFWVPDS SNRSYKI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3703528e-75AK370352.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2109D12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149861.14e-34MADS-box transcription factor 51-like
RefseqXP_020149862.14e-34MADS-box transcription factor 51-like
SwissprotQ9XJ614e-29MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A446SIC83e-52A0A446SIC8_TRITD; Uncharacterized protein
STRINGTraes_4BL_B8FFB0854.22e-64(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.15e-26AGAMOUS-like 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]