PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BL_B64C157DC.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HSF

Protein Properties

Length: 281aa MW: 30272.4 Da PI: 5.4318

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BL_B64C157DC.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	102.3	4.3e-32	24	116	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 F+ k+y +++d++++ ++ w gnsfvv d+ f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++ weF+h sF +g Traes_4BL_B64C157DC.1 24 FVAKTYGMVDDRATDAVVAWGPAGNSFVVADPFAFSRALLPAHFKHANFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRG 102 9**************************************************************999.........******* PP XXXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkkse 103 +++ll +i r++s+ Traes_4BL_B64C157DC.1 103 QTHLLPRIVRRQSS 116 *********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.6E-35	20	113	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.45E-31	20	113	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.7E-49	20	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-17	24	47	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.7E-28	24	113	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-17	62	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	63	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-17	75	87	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MSGGGMDSSS SSSSGTGGSG AAPFVAKTYG MVDDRATDAV VAWGPAGNSF VVADPFAFSR 60 ALLPAHFKHA NFSSFVRQLN TYGFRKVDPD RWEFAHASFL RGQTHLLPRI VRRQSSKRGK 120 DSREEEEEES SSAALAMEVV RLRKEQRATE ERVAEMWRRV QETERRPKQM LAFLLKVVGD 180 PDVLRRLAGG PGSGGGPDEG AEEGKXEGAE EVKRPRLLLD GDGAGVDGGL LYHHSGNLMN 240 LGEALVPEEP SVDMYYAGGD GFGGVQADGG PPYAFHMDTG Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	2e-25	17	116	13	123	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK368120	1e-171	AK368120.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2068I23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020162064.1	1e-148	heat stress transcription factor C-2a-like
Swissprot	Q6EUG4	3e-89	HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBL	A0A3B6IYA4	1e-156	A0A3B6IYA4_WHEAT; Uncharacterized protein
TrEMBL	A0A446SKH3	1e-156	A0A446SKH3_TRITD; Uncharacterized protein
STRING	Traes_4BL_B64C157DC.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4471	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	6e-60	heat shock transcription factor C1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]