PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

Traes_4BL_86572BB6D.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HSF

Protein Properties

Length: 46aa MW: 5452.15 Da PI: 12.1188

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BL_86572BB6D.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	45.9	1.6e-14	1	44	50	102
HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 50 faSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102 f+SFv QLn+YgF+kv+ ++ weF+h sF +g+++ll++i r+++ Traes_4BL_86572BB6D.1 1 FSSFVSQLNTYGFRKVDPDR---------WEFAHASFLRGQTHLLRRIVRRQN 44 79*************999.........********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.0E-4	1	42	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.72E-12	1	42	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	4.2E-14	1	42	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	9.1E-12	1	42	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 46 aa Download sequence Send to blast
FSSFVSQLNT YGFRKVDPDR WEFAHASFLR GQTHLLRRIV RRQNGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	6e-52	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020162064.1	4e-23	heat stress transcription factor C-2a-like
Swissprot	Q6EUG4	4e-23	HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBL	A0A446SK95	4e-24	A0A446SK95_TRITD; Uncharacterized protein
STRING	Traes_4BL_86572BB6D.1	2e-26	(Triticum aestivum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17750.1	4e-21	heat shock factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]