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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_7F70575F9.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 293aa MW: 30534.3 Da PI: 7.771 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 84.8 | 1.2e-26 | 4 | 105 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilk 82 +C++C+ lr++Ca+dC+++p++ +++q++++ +++k++G++ +l+ll+a ++ r+++++sl+yeA+ r+ +PvyGa+g++++ Traes_4BL_7F70575F9.1 4 SCNGCRALRKGCADDCTIRPCLawirgADAQANATVFLAKFYGRAGLLNLLAAGtDPALRPALFRSLLYEACGRVANPVYGATGLFTT 91 6*********************9999777899********************9845566***************************** PP DUF260 83 lqqqleqlkaelal 96 +q++ +q +++++ Traes_4BL_7F70575F9.1 92 GQWEACQDAVQAVF 105 *******9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.104 | 3 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-22 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MRASCNGCRA LRKGCADDCT IRPCLAWIRG ADAQANATVF LAKFYGRAGL LNLLAAGTDP 60 ALRPALFRSL LYEACGRVAN PVYGATGLFT TGQWEACQDA VQAVFEGRRI PVRSGAVRHP 120 GLVAAYDVRR HVPRPNVVPA PANAAGPLAL GVSRAMFKRA SSSSTAKSKS PSGAGRGEHD 180 GDLDRVPSHG ESAGSHDHVE DDGVAVAVAV AAKQVRGESR DAEAEAASHV SQAERNPPVP 240 QLAREDDDEI GLELTLGFGS STRVLRSPPA RSDAASSSSA ECGHIGLLLD LPV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200106.1 | 0.0 | LOB domain-containing protein 42-like | ||||
TrEMBL | A0A3B6IZ78 | 0.0 | A0A3B6IZ78_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4BL_7F70575F9.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-44 | LOB domain-containing protein 41 |
Publications ? help Back to Top | |||
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