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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_581E788ED.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 67aa MW: 7639.75 Da PI: 8.0829 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 31 | 51 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +C++ F ++ L H++ H Traes_4BL_581E788ED.1 31 CVYCDRQFVTSQALGGHQNAH 51 ******************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.58E-10 | 22 | 64 | No hit | No description |
PROSITE profile | PS50157 | 10.824 | 29 | 56 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 31 | 53 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 6.9E-5 | 31 | 53 | IPR022755 | Zinc finger, double-stranded RNA binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 67 aa Download sequence Send to blast |
MEQLTGEQEE LCLELTLRPM VPEPRVGFFL CVYCDRQFVT SQALGGHQNA HKHERSVAKR 60 RRQAAAA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169302.1 | 5e-36 | zinc finger protein 2-like | ||||
TrEMBL | A0A3B6IXT9 | 1e-41 | A0A3B6IXT9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446SJL0 | 1e-41 | A0A446SJL0_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BL_581E788ED.1 | 8e-43 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01860.1 | 5e-14 | C2H2 family protein |
Publications ? help Back to Top | |||
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