PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

M-type_MADS

Protein Properties

Length: 127aa MW: 14486.7 Da PI: 10.7448

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BL_410DEBFD3.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.1	1.3e-24	12	61	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien rqvtfskRr g++KKA ELS+LCdaev + +fs tgkl+ ++s Traes_4BL_410DEBFD3.2 12 RIENLAARQVTFSKRRRGLFKKAGELSILCDAEVGLAVFSATGKLFQFAS 61 8**********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	26.997	3	63	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.2E-32	3	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.8E-25	5	25	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.62E-37	5	76	No hit	No description
SuperFamily	SSF55455	4.71E-30	5	88	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.1E-24	12	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.8E-25	25	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.8E-25	40	61	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MAGKRERIAI RRIENLAARQ VTFSKRRRGL FKKAGELSIL CDAEVGLAVF SATGKLFQFA 60 SSSMNQIIDR YNSHSKILKK ADEPSQLDLH EDSNCARLRD ELAEASLWLQ QGAFVVSKRC 120 IRQYKRK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	6e-20	5	76	3	74	MEF2C
5f28_B	6e-20	5	76	3	74	MEF2C
5f28_C	6e-20	5	76	3	74	MEF2C
5f28_D	6e-20	5	76	3	74	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ512333	0.0	DQ512333.1 Triticum aestivum MADS-box transcription factor TaAGL13 (AGL13) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020161640.1	6e-75	MADS-box transcription factor 47-like
Swissprot	Q5K4R0	2e-56	MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBL	A0A446SEZ7	2e-87	A0A446SEZ7_TRITD; Uncharacterized protein
STRING	Traes_4BL_410DEBFD3.2	4e-88	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1221	36	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	1e-39	MIKC_MADS family protein

Publications ? help Back to Top
Lee S,Choi SC,An G Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses. Plant J., 2008. 54(1): p. 93-105 [PMID:18182025] Lee S,Jeong DH,An G A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses. Plant Signal Behav, 2008. 3(7): p. 471-4 [PMID:19704489] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]