PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_208AF4C7D.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 786aa MW: 90089.2 Da PI: 7.6998 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 44.7 | 4.4e-14 | 24 | 107 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 k+Y++YA + GFs ++ ks++ ++g + + + Cs++g+ + + +r++ +++C a++ +k+++d ++++ +l+HnH+ Traes_4BL_208AF4C7D.2 24 KYYKQYAADSGFSAVTLKSSYL-KSGVCRRLVLGCSRSGRGRANACY-----LSRETAKINCPARISLKLRQDRWLHIDDAKLDHNHP 105 69***********999999887.7888***************99998.....89999**************99999************ PP FAR1 89 la 90 l+ Traes_4BL_208AF4C7D.2 106 LN 107 96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.0E-11 | 24 | 107 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.8E-24 | 211 | 304 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.137 | 498 | 534 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.7E-5 | 509 | 536 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 3.0E-6 | 511 | 530 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 786 aa Download sequence Send to blast |
GGAKVDENVP RIGLRFKTYD DALKYYKQYA ADSGFSAVTL KSSYLKSGVC RRLVLGCSRS 60 GRGRANACYL SRETAKINCP ARISLKLRQD RWLHIDDAKL DHNHPLNQSS DSPMSCYKKL 120 TDAKSVENGS RLKGRRNVPI ADKEQGNFTE IGRLKFGEGD DEQIQKFFGS MQNKNPNFFY 180 LVDLDKQGRL RNLFWSDARS QAAHEYFGHD VVYFDTLYLT DKYDLPLVFF TGMNNHGHPV 240 LFGTGLLSDL SAESYTWLFR AFLSCMKGCY PDTIITEHYN AILDAVREVF SQVKHRLCLY 300 RIMRDVAENL KAHAEFKTIK RALKKVTYGS LKPPEFEADW KKVIEEHGLA GNECLSSLHE 360 HRQLWAPAYL KDKFWAGMSV SQRGESVASY YDGFVYPKTS LKQFFSKYEM ILENKYKKEL 420 QADEESSHRT PLTVTKFYME EQLAKAYTIN MFRKFQEELK ATMYCDGMPS KVDGPFVTFE 480 VKECSYMEDG KETESRTYEV YFCKEGLIVE CECGFFQFTG ILCRHALSVF KLHDMFEIPS 540 RYVLDRWKRD YKKLHALAHY PNEMLLGDTV ERHDYLSTQC RQVLNLGFIS ESRYLVALKL 600 LREAERALLD DGQPARDRQP RLLSFEADAP ENGQGLFSSQ FPEGEKNSLS TNAKHPGRPA 660 KKVAETDPDA VLRSNKEQQD FLRSSFVPTE ANMIQGTSSG SHLESPDMGV PGSIHLMEGI 720 SPNLTFGPHF GMDVSHQHQL PNQPRMMPNN FMQVQADPHV FGNQWAYNQT MQVCPHTNVY 780 PFFLAA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157633.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A446TR22 | 0.0 | A0A446TR22_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BL_208AF4C7D.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-121 | FAR1-related sequence 6 |
Publications ? help Back to Top | |||
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