![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_4BL_011308A76.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 99aa MW: 10956.7 Da PI: 10.5301 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 241.8 | 4.9e-74 | 1 | 99 | 203 | 301 |
GAGA_bind 203 lDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWA 290 +D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt+iS+yPLP++tkrrgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WA Traes_4BL_011308A76.1 1 FDISRIPTPVCSCTGAPQQCYRWGAGGWQSACCTTSISTYPLPMNTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWA 88 7*************************************************************************************** PP GAGA_bind 291 kHGtnkfvtir 301 kHGtnkfvtir Traes_4BL_011308A76.1 89 KHGTNKFVTIR 99 **********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 9.7E-36 | 1 | 99 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 7.2E-73 | 1 | 99 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 99 aa Download sequence Send to blast |
FDISRIPTPV CSCTGAPQQC YRWGAGGWQS ACCTTSISTY PLPMNTKRRG ARIAGRKMSQ 60 GAFKKVLEKL AGEGYNLNNP IDLKTFWAKH GTNKFVTIR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ507214 | 1e-153 | AJ507214.1 Hordeum vulgare bbr gene for barley B recombinant. | |||
GenBank | AK372672 | 1e-153 | AK372672.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3008N24. | |||
GenBank | AK376389 | 1e-153 | AK376389.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H22. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165863.1 | 9e-69 | protein Barley B recombinant | ||||
Swissprot | Q8GUC3 | 1e-69 | BBR_HORVU; Protein Barley B recombinant | ||||
TrEMBL | A0A287PDI9 | 3e-69 | A0A287PDI9_HORVV; Uncharacterized protein | ||||
STRING | EMT03273 | 2e-68 | (Aegilops tauschii) | ||||
STRING | Traes_4BL_011308A76.1 | 3e-69 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2211 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14685.3 | 3e-59 | basic pentacysteine 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|