 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Traes_4AS_F04DD4409.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 278aa MW: 30384.9 Da PI: 7.2679 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Traes_4AS_F04DD4409.1 | genome | IWGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.9 | 3.6e-18 | 68 | 116 | 8 | 56 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k
Traes_4AS_F04DD4409.1 68 NVEQVRTLEKNFEVANKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 116
579*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 122.9 | 1.6e-39 | 69 | 152 | 8 | 91 |
HD-ZIP_I/II 8 keqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
eqv++LE++Fe +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k+en++L +++++L++e+
Traes_4AS_F04DD4409.1 69 VEQVRTLEKNFEVANKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFDAVKAENDALLSHNKKLQSEI 152
79*******************************************************************************987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MPCQLIRHPR TDRARSLSPM LGKRPAMYGG GGDGGCGGDE VTGGGGGGGA XXXXXXXXXX 60
XXXXXXXNVE QVRTLEKNFE VANKLEPERK MQLARALGLQ PRQVAIWFQN RRARWKTKQL 120
EKDYDVLKRQ FDAVKAENDA LLSHNKKLQS EILGLKGCRE AASELINLNK ETEASCSNRS 180
ENSSEINLDI SRTPPSDGPM DAPPSHQQGG GSGGGMIPFY PSVARPSAGV DIDHLLHASV 240
PKMEHHHGGP DTASFGNLLC GVDEPPPFWP WADHQQFN
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 110 | 118 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK359041 | 0.0 | AK359041.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1087P18. |
| GenBank | AK359747 | 0.0 | AK359747.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1102E15. |
| GenBank | AK366245 | 0.0 | AK366245.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2041G22. |
