PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AS_EC04D9E8A.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WOX

Protein Properties

Length: 307aa MW: 31538.1 Da PI: 8.2065

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AS_EC04D9E8A.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.7	2.6e-15	33	93	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Traes_4AS_EC04D9E8A.1 33 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 93 89***************99***********************************997 PP
2	Wus_type_Homeobox	106.9	1.2e-34	32	95	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q Traes_4AS_EC04D9E8A.1 32 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 95 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.42E-14	29	101	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.256	29	94	IPR001356	Homeobox domain
SMART	SM00389	1.2E-6	31	98	IPR001356	Homeobox domain
Pfam	PF00046	4.8E-13	33	93	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-8	33	100	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MEGGSNSPDG QSSGGSPEER RSSGGRGAGE PVRSRWTPKP EQILILESIF NSGMVNPPKD 60 ETVRIRKLLE RFGAVGDANV FYWFQNRRSR SRRRQRQMQA AAAAAATAAA ASSANSLPAA 120 SATIGLPSGT GSVHPMAIGG GASQYEQQAT SSSSSGSTGG SSLGPFAAHV AGVSGAGVGY 180 LQASCGTSSP LASGLMADVD SGGSDDLFAI SRQMGFVGSP AGSSSAAPNT AVQQQYYSCQ 240 LPAAAITVFI NGVPMEVPRG PIDLRAMFGQ DVVLLHSTGT LLPVNDYGIL IQSLQMGESY 300 FLVSRQT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728413	1e-112	KJ728413.1 Zea mays clone pUT6718 HB transcription factor (HB130) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164667.1	1e-167	WUSCHEL-related homeobox 6-like
Swissprot	A2XG77	1e-109	WOX6_ORYSI; WUSCHEL-related homeobox 6
TrEMBL	A0A3B6HR40	0.0	A0A3B6HR40_WHEAT; Uncharacterized protein
TrEMBL	A0A446QV93	0.0	A0A446QV93_TRITD; Uncharacterized protein
STRING	Traes_4AS_EC04D9E8A.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	3e-33	WUSCHEL related homeobox 12

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]