PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AS_EC04D9E8A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WOX | ||||||||
Protein Properties | Length: 307aa MW: 31538.1 Da PI: 8.2065 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.7 | 2.6e-15 | 33 | 93 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Traes_4AS_EC04D9E8A.1 33 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 93 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 106.9 | 1.2e-34 | 32 | 95 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q Traes_4AS_EC04D9E8A.1 32 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 95 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.42E-14 | 29 | 101 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.256 | 29 | 94 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-6 | 31 | 98 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.8E-13 | 33 | 93 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-8 | 33 | 100 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MEGGSNSPDG QSSGGSPEER RSSGGRGAGE PVRSRWTPKP EQILILESIF NSGMVNPPKD 60 ETVRIRKLLE RFGAVGDANV FYWFQNRRSR SRRRQRQMQA AAAAAATAAA ASSANSLPAA 120 SATIGLPSGT GSVHPMAIGG GASQYEQQAT SSSSSGSTGG SSLGPFAAHV AGVSGAGVGY 180 LQASCGTSSP LASGLMADVD SGGSDDLFAI SRQMGFVGSP AGSSSAAPNT AVQQQYYSCQ 240 LPAAAITVFI NGVPMEVPRG PIDLRAMFGQ DVVLLHSTGT LLPVNDYGIL IQSLQMGESY 300 FLVSRQT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728413 | 1e-112 | KJ728413.1 Zea mays clone pUT6718 HB transcription factor (HB130) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164667.1 | 1e-167 | WUSCHEL-related homeobox 6-like | ||||
Swissprot | A2XG77 | 1e-109 | WOX6_ORYSI; WUSCHEL-related homeobox 6 | ||||
TrEMBL | A0A3B6HR40 | 0.0 | A0A3B6HR40_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446QV93 | 0.0 | A0A446QV93_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AS_EC04D9E8A.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1078 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 3e-33 | WUSCHEL related homeobox 12 |
Publications ? help Back to Top | |||
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