PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_866E12EE7.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 326aa    MW: 36172 Da    PI: 7.6975
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_866E12EE7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12185210126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            y   +C+++ +tG+C yGd+CkF+H+
  Traes_4AS_866E12EE7.1 185 YQPDICKDYKETGYCGYGDSCKFMHD 210
                            67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.7E-9182215IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7184211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878184212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12185215IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10185210IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.106.8E-14247303IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.1E-8261302No hitNo description
SuperFamilySSF578501.77E-13261304No hitNo description
SMARTSM001847.5E-5262299IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.689262300IPR001841Zinc finger, RING-type
CDDcd001621.60E-8262303No hitNo description
PROSITE patternPS005180277286IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSDGGGGEPG AGGSAPVCNF VRKPPKNIRK RPAASVGSDD EEGSGGDDSG AIAAARSKKP  60
PSTTSKLFFS SADNSHEPRR FQFESSRTIQ SSTDNRATAT LETETAYDRD ARAIRERQLK  120
QAEESLKKNP SASSSSGELY KGIHGYTDHK AGFRREHTVS GEKAGGAHGP LRASAHIRLS  180
TRFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQL EREWDEAEKA RKRRIAMREL  240
DGSDAEAEEE DSDDDEALPF ACFICREPFV DPVVTKCKHY FCEHCALKHH SKNKKCFVCN  300
KPTLGIFNAA QEIRKKIAQD KKQQDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-631731714317RING finger protein 113A
5z58_M3e-631731714317RING finger protein 113A
6ff4_t3e-631731714317RING finger protein 113A
6ff7_t3e-631731714317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614000.0AK361400.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1139O11.
GenBankAK3711030.0AK371103.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2125B03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156391.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ6K4V31e-163C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A3B6HSX00.0A0A3B6HSX0_WHEAT; Uncharacterized protein
STRINGTraes_4AS_866E12EE7.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-130C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]