 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Traes_4AS_669BAF6C7.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
| Family |
LBD |
| Protein Properties |
Length: 223aa MW: 23917.2 Da PI: 6.8766 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Traes_4AS_669BAF6C7.1 | genome | IWGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 128.8 | 2.4e-40 | 52 | 151 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88
+CaaCkvlrr+Ca++C+lapyfp + p+kf +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g++ +lq++ +
Traes_4AS_669BAF6C7.1 52 PCAACKVLRRRCADGCMLAPYFPPTGPAKFTTAHRVFGASNIIKLLQDLPESSRADAVSSMVYEAEARLRDPVYGCAGTVCRLQKEAN 139
7*************************************************************************************** PP
DUF260 89 qlkaelallkee 100
+lk++la+++++
Traes_4AS_669BAF6C7.1 140 ELKVDLARAQAN 151
*******99876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MDYSNEATIT AAAQPYGRSM SPPSRVSSCS PPPVFPLMGN APSSPPTIVL SPCAACKVLR 60
RRCADGCMLA PYFPPTGPAK FTTAHRVFGA SNIIKLLQDL PESSRADAVS SMVYEAEARL 120
RDPVYGCAGT VCRLQKEANE LKVDLARAQA NLLSIQTQHA NLLALVCVEF AANHRGDQQL 180
HQPPPLGDQL NGIGGSGGGA MYQPLYNSDF DSAPWEEARQ LWT
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU953937 | 1e-131 | EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds. |
