PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_52EB860E7.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 341aa    MW: 39598.9 Da    PI: 4.7937
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_52EB860E7.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.53.7e-32461362101
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+++++ d++++ ++sw + g+sfvv+d++ fa  +Lp++Fkhsnf+SFvRQLn+YgF+k++ ++         weF+++ F +g
  Traes_4AS_52EB860E7.2  46 FLTKTFDLVADPATDGVVSWGRAGDSFVVWDPHLFAAVLLPRFFKHSNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFIRG 124
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkk 101
                            +++ll+ ikr++
  Traes_4AS_52EB860E7.2 125 QRQLLKMIKRRR 136
                            **********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.63E-3442135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5842135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.9E-3642135IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.6E-184669IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.6E-3046135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-188496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-1897109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDRVLLPVRV KEEWPPPPPE EEEELEHRGL APRPMEGLHE TGPPPFLTKT FDLVADPATD  60
GVVSWGRAGD SFVVWDPHLF AAVLLPRFFK HSNFSSFVRQ LNTYGFRKID PDRWEFANEG  120
FIRGQRQLLK MIKRRRPMSY LPSSQQQALG SCLEVGQFGF DEEIEVLKRD KNALLAEVVK  180
LRQEQQSSRA DMRAMEERLH HVEQKQLQMM GFLARAIQNP DFFLQLIQQQ NKLKDLEDGY  240
PTKRRRPIDV MPFLGPEGTS QSEPLESTFI FEDREFSELE NLAMNIQGIR KGMEDDRGGR  300
NQGCGEAELT DDFWEELLSE GMRDEAEMLE LERRRSRCFD A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-244413518120Heat shock factor protein 1
5hdg_A2e-24441358110Heat shock factor protein 1
5hdn_A2e-24441358110Heat shock factor protein 1
5hdn_B2e-24441358110Heat shock factor protein 1
5hdn_C2e-24441358110Heat shock factor protein 1
5hdn_D2e-24441358110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134LKMIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7741080.0KJ774108.1 Triticum aestivum genotype SB169 heat shock factor A6 (HsfA6f) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178141.10.0heat stress transcription factor A-2d-like
SwissprotQ8H7Y61e-174HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A446QM040.0A0A446QM04_TRITD; Uncharacterized protein
TrEMBLW5DXD40.0W5DXD4_WHEAT; Heat shock factor HsfA2e
STRINGTraes_4AS_52EB860E7.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.17e-97heat shock transcription factor A6B
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]