PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AS_4F615C5CC.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TALE | ||||||||
Protein Properties | Length: 591aa MW: 63163.6 Da PI: 6.4025 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.5 | 4.6e-08 | 359 | 396 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA++ gL+ qV++WF N R + Traes_4AS_4F615C5CC.2 359 FEHflHPYPKDSEKVMLARQAGLSRGQVSNWFINARVR 396 554459******************************88 PP | |||||||
2 | BELL | 115 | 3.7e-37 | 221 | 292 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+lq+k + L+ +l++Vd+rY++y++q+q+v+ssF+avag g+akpYt+lAl++iSrhFr+L+dai q+ Traes_4AS_4F615C5CC.2 221 ERQDLQNKVTALMAMLDQVDRRYRHYHQQMQMVVSSFDAVAGSGAAKPYTALALQTISRHFRSLRDAIGAQV 292 799*****************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.2E-52 | 153 | 290 | IPR006563 | POX domain |
Pfam | PF07526 | 6.6E-49 | 159 | 288 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.839 | 337 | 400 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.11E-11 | 340 | 401 | No hit | No description |
SMART | SM00389 | 6.2E-8 | 340 | 404 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.04E-16 | 341 | 407 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-26 | 343 | 406 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.6E-16 | 357 | 396 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MATFFSTSND QRGLAGGGGG GGDMSFHHHY PMSNQYPDSS TGGLIPLPAS IVQQSHIAHH 60 GGGGDGRDDE PAAFMSSRDG SELGGLQTQM LMGDGGASAG QRSHQGGLSL SLGSQVSVSL 120 YQYGRPGGMA AAAFPTLMSP NQSAMAMAAS RNAQVNVYVQ NSRFLKAARE LLDEVVSVRD 180 AIKRKGDRKD DSAGNGECGK VEGDKGEENE GSSAAELSPA ERQDLQNKVT ALMAMLDQVD 240 RRYRHYHQQM QMVVSSFDAV AGSGAAKPYT ALALQTISRH FRSLRDAIGA QVQSARRSLG 300 EPQDGSGAGG LSRLRYIDQH LRQQRAMQQF GMMQQPQHAW RPQRGLPESA VSVLRAWLFE 360 HFLHPYPKDS EKVMLARQAG LSRGQVSNWF INARVRLWKP MVEEMYKEEF GAEMDSTNSS 420 SEKAGNKHGK VDEAACSEDQ DRDEFQSTST HAGASQLLNA YKSEPVGSMD AGPLSSLGGG 480 DMGTTYAPAG PSLNHHGPGG GSLLQDAFAH HGGDDARFVT YGGSMGDLGG SVSLTLGLQH 540 CNNNNNNAGH VPPEQQGLLY GNPGDFDFLN GGDDRQRFAS SSSQLLHDFV T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5bng_A | 1e-16 | 346 | 404 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 1e-16 | 346 | 404 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367579 | 0.0 | AK367579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059B17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165933.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
TrEMBL | A0A3B6HQS2 | 0.0 | A0A3B6HQS2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4AS_4F615C5CC.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP901 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16400.1 | 1e-115 | BEL1-like homeodomain 7 |
Publications ? help Back to Top | |||
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