PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_4F615C5CC.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 591aa    MW: 63163.6 Da    PI: 6.4025
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_4F615C5CC.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.54.6e-083593961954
                            HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            Fe   ++yp+ +e+  LA++ gL+  qV++WF N R +
  Traes_4AS_4F615C5CC.2 359 FEHflHPYPKDSEKVMLARQAGLSRGQVSNWFINARVR 396
                            554459******************************88 PP
2BELL1153.7e-37221292172
                   BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                            erq+lq+k + L+ +l++Vd+rY++y++q+q+v+ssF+avag g+akpYt+lAl++iSrhFr+L+dai  q+
  Traes_4AS_4F615C5CC.2 221 ERQDLQNKVTALMAMLDQVDRRYRHYHQQMQMVVSSFDAVAGSGAAKPYTALALQTISRHFRSLRDAIGAQV 292
                            799*****************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.2E-52153290IPR006563POX domain
PfamPF075266.6E-49159288IPR006563POX domain
PROSITE profilePS5007111.839337400IPR001356Homeobox domain
CDDcd000863.11E-11340401No hitNo description
SMARTSM003896.2E-8340404IPR001356Homeobox domain
SuperFamilySSF466893.04E-16341407IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-26343406IPR009057Homeodomain-like
PfamPF059202.6E-16357396IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MATFFSTSND QRGLAGGGGG GGDMSFHHHY PMSNQYPDSS TGGLIPLPAS IVQQSHIAHH  60
GGGGDGRDDE PAAFMSSRDG SELGGLQTQM LMGDGGASAG QRSHQGGLSL SLGSQVSVSL  120
YQYGRPGGMA AAAFPTLMSP NQSAMAMAAS RNAQVNVYVQ NSRFLKAARE LLDEVVSVRD  180
AIKRKGDRKD DSAGNGECGK VEGDKGEENE GSSAAELSPA ERQDLQNKVT ALMAMLDQVD  240
RRYRHYHQQM QMVVSSFDAV AGSGAAKPYT ALALQTISRH FRSLRDAIGA QVQSARRSLG  300
EPQDGSGAGG LSRLRYIDQH LRQQRAMQQF GMMQQPQHAW RPQRGLPESA VSVLRAWLFE  360
HFLHPYPKDS EKVMLARQAG LSRGQVSNWF INARVRLWKP MVEEMYKEEF GAEMDSTNSS  420
SEKAGNKHGK VDEAACSEDQ DRDEFQSTST HAGASQLLNA YKSEPVGSMD AGPLSSLGGG  480
DMGTTYAPAG PSLNHHGPGG GSLLQDAFAH HGGDDARFVT YGGSMGDLGG SVSLTLGLQH  540
CNNNNNNAGH VPPEQQGLLY GNPGDFDFLN GGDDRQRFAS SSSQLLHDFV T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A1e-16346404159Homeobox protein Meis2
5bng_B1e-16346404159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3675790.0AK367579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059B17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165933.10.0BEL1-like homeodomain protein 7
TrEMBLA0A3B6HQS20.0A0A3B6HQS2_WHEAT; Uncharacterized protein
STRINGTraes_4AS_4F615C5CC.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-115BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]